Factsheet for GSMUA_Achr3P03540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	41.79	69.71
GSMUA_Achr10P...	Banana	nucleus	41.54	67.07
GSMUA_Achr10P...	Banana	nucleus	42.04	63.77
GSMUA_Achr6P14430_001	Banana	nucleus	35.57	59.58
GSMUA_Achr7P13980_001	Banana	nucleus	51.74	56.52
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	58.46	49.89
GSMUA_Achr3P31370_001	Banana	nucleus	31.84	49.04
TraesCS3B01G164500.1	Wheat	nucleus	47.51	42.44
TraesCS3D01G146900.1	Wheat	nucleus	47.51	42.07
TraesCS3A01G140100.1	Wheat	nucleus	47.01	41.36
Zm00001d008919_P001	Maize	nucleus, plastid	41.54	39.29
Os01t0213800-01	Rice	mitochondrion	47.26	32.82
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	47.76	32.54
Zm00001d039371_P001	Maize	mitochondrion	45.02	32.04
OQU86111	Sorghum	plastid	46.52	29.82
GSMUA_Achr2P12990_001	Banana	nucleus	21.64	23.02
GSMUA_Achr7P01160_001	Banana	nucleus	20.9	21.99
GSMUA_Achr4P31520_001	Banana	nucleus	20.65	21.84
GSMUA_Achr4P22960_001	Banana	nucleus	19.9	20.94
GSMUA_Achr5P02530_001	Banana	nucleus	19.4	20.42
GSMUA_Achr6P27420_001	Banana	nucleus	14.93	20.07
GSMUA_Achr4P32850_001	Banana	nucleus	14.18	16.62
GSMUA_Achr2P21050_001	Banana	mitochondrion	10.45	16.09
GSMUA_Achr2P22480_001	Banana	cytosol	10.95	13.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	10.95	13.33

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G03540_001	EnsemblPlants:GSMUA_Achr3P03540_001
EnsemblPlants:GSMUA_Achr3T03540_001	InterPro:IPR017887	UniProt:M0SBH2	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296720B	SEG:seg	:

Description

Putative TCP1 protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G03540_001]

Coordinates

chr3:+:2296144..2298136

Molecular Weight (calculated)

43579.8 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.475

Length

402 amino acids

Sequence
(BLAST)

001: MGEHHSHHGS LGLHQLALHH HQQQQQREQR AQTHSRLGRL RAAGGEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR
101: PSKAVDWLIK NAKAAIDQLA ELPAAWIPTA AVTADAAATS TSFSMPDFPT AFSFGGPKGT GGSISFLPPS LDSDHIADTI KSFFPMAAAG GTTISPSSIP
201: SIGFHNYPSD LLSRTSGRTQ DLRLSLQSFQ DPIFHNAQSN QQHHSPTPAH LSEWNVAETS GGAGLYGFAF NVPPLQAVPL HSVLGPSQFL TQRGPLQSSN
301: SPSVRGWADP VDPTSELHMQ PVLHPSAASI GFTSEADFSG FHVPARIQGE EEHGDICSSN DHKFKDFNMN INCSNKSAIA KIRSPMYFLE SEGDTISDLK
401: QT

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.