Factsheet for GSMUA_Achr2P22480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21050_001	Banana	mitochondrion	60.8	75.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	25.93	25.45
TraesCS5A01G001900.1	Wheat	nucleus	20.99	24.91
TraesCS5D01G002300.1	Wheat	nucleus	20.06	24.62
TraesCS5B01G002300.1	Wheat	nucleus	20.99	23.05
HORVU5Hr1G000490.1	Barley	nucleus	20.99	22.9
TraesCS4A01G271300.1	Wheat	nucleus	23.46	21.59
TraesCS4D01G040100.1	Wheat	nucleus	23.46	21.59
TraesCS4B01G042700.1	Wheat	nucleus	23.46	21.47
HORVU4Hr1G007040.1	Barley	nucleus	22.84	20.73
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	23.46	20.0
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	22.53	19.95
Os03t0706500-01	Rice	nucleus	23.46	19.59
Zm00001d013467_P001	Maize	nucleus	21.3	19.22
GSMUA_Achr6P14430_001	Banana	nucleus	12.04	16.25
GSMUA_Achr8P19990_001	Banana	nucleus	11.73	15.77
GSMUA_Achr10P...	Banana	nucleus	12.04	15.66
GSMUA_Achr10P...	Banana	nucleus	12.65	15.47
GSMUA_Achr3P31370_001	Banana	nucleus	11.73	14.56
GSMUA_Achr6P27420_001	Banana	nucleus	11.42	12.37
GSMUA_Achr4P32850_001	Banana	nucleus	12.96	12.24
GSMUA_Achr7P13980_001	Banana	nucleus	13.89	12.23
GSMUA_Achr7P01160_001	Banana	nucleus	13.89	11.78
GSMUA_Achr4P22960_001	Banana	nucleus	12.96	10.99
GSMUA_Achr3P03540_001	Banana	nucleus	13.58	10.95
GSMUA_Achr2P12990_001	Banana	nucleus	12.65	10.85
GSMUA_Achr4P31520_001	Banana	nucleus	12.04	10.26
GSMUA_Achr5P02530_001	Banana	nucleus	12.04	10.21
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	13.27	9.13

Protein Annotations

MapMan:15.5.19	InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G22480_001
EnsemblPlants:GSMUA_Achr2P22480_001	EnsemblPlants:GSMUA_Achr2T22480_001	InterPro:IPR017887	InterPro:IPR017888	UniProt:M0SA89	PFAM:PF03634
PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000296A287	SEG:seg	:	:	:	:

Description

Putative TB1 protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G22480_001]

Coordinates

chr2:-:21556223..21557266

Molecular Weight (calculated)

35677.9 Da

IEP (calculated)

5.747

GRAVY (calculated)

-0.408

Length

324 amino acids

Sequence
(BLAST)

001: MLPIRDPEYI FDQSLNEQLE FNPPHLLLPN SSCFPSSTPT IFCPDAFRDL FLASSNIGIA NAAPTSTRPS LPLGDSATSV ERQEGDDSCS RKRALSKCRH
101: SKIVTANGPR DRRMRLSIDV ARSFFRLQDT LGFDKASKTV QWLLTVSKAA IEELGTLSSA EHSGCSNRSP KSESSALVCQ DSSAISRGVK PTRKVEYHSA
201: LARESRAKAR ARAKERTREK QRMTSLDIIK EETSLNNMNS LMEFANIEED ESCAPNWCLN VASDTAAAYE VPMIGGPVLI PVFENSQYTT AINHAGGIFE
301: EQWDVDALSL YSTSLVASDS YPNL

Best Arabidopsis Sequence Match ( AT1G67260.3 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.