Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G001900.1 | Wheat | nucleus | 89.02 | 86.08 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 90.15 | 80.68 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 86.74 | 77.1 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 46.97 | 35.23 |
| TraesCS5D01G213400.1 | Wheat | cytosol | 25.38 | 24.36 |
| TraesCS2D01G019300.1 | Wheat | extracellular | 21.21 | 23.73 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 23.11 | 23.37 |
| PGSC0003DMT400008673 | Potato | nucleus | 13.26 | 22.29 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 20.08 | 22.27 |
| PGSC0003DMT400010380 | Potato | nucleus | 23.48 | 22.22 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 19.32 | 21.16 |
| Solyc03g045030.1.1 | Tomato | nucleus | 14.39 | 20.77 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 24.62 | 20.06 |
| CDY33597 | Canola | nucleus | 24.24 | 19.81 |
| CDX95517 | Canola | nucleus | 20.83 | 19.43 |
| CDY18525 | Canola | nucleus | 20.83 | 19.43 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 24.24 | 19.39 |
| Bra037579.1-P | Field mustard | nucleus | 20.83 | 19.3 |
| CDY45852 | Canola | nucleus | 23.86 | 18.98 |
| Bra038350.1-P | Field mustard | nucleus | 23.86 | 18.81 |
| CDX81550 | Canola | nucleus | 23.86 | 18.64 |
| KRH56692 | Soybean | nucleus | 26.14 | 18.35 |
| KRH63057 | Soybean | nucleus | 26.52 | 18.18 |
| KRH03810 | Soybean | nucleus | 26.14 | 18.16 |
| Solyc03g119770.2.1 | Tomato | nucleus | 23.48 | 17.92 |
| AT1G68800.2 | Thale cress | nucleus | 24.24 | 17.68 |
| KRH54810 | Soybean | nucleus | 26.52 | 17.68 |
| PGSC0003DMT400019324 | Potato | nucleus | 25.38 | 17.59 |
| Solyc04g006980.1.1 | Tomato | nucleus | 24.62 | 17.33 |
| CDY12633 | Canola | nucleus | 20.83 | 17.08 |
| KRH01497 | Soybean | plastid | 23.86 | 17.03 |
| Solyc05g009900.1.1 | Tomato | nucleus | 22.73 | 17.0 |
| Solyc06g069240.1.1 | Tomato | nucleus | 26.14 | 17.0 |
| CDY46042 | Canola | nucleus | 21.97 | 16.76 |
| KRH45185 | Soybean | plastid | 23.48 | 16.76 |
| PGSC0003DMT400014572 | Potato | nucleus | 23.86 | 16.67 |
| Bra034010.1-P | Field mustard | nucleus | 21.59 | 16.47 |
| CDY01793 | Canola | nucleus | 21.97 | 16.43 |
| Bra004212.1-P | Field mustard | nucleus | 21.21 | 16.42 |
| PGSC0003DMT400002153 | Potato | nucleus | 21.97 | 16.38 |
| CDX96104 | Canola | nucleus | 21.59 | 16.24 |
| KRH18263 | Soybean | plastid | 25.0 | 15.75 |
| KRG93829 | Soybean | nucleus, plastid | 24.62 | 15.62 |
| AT1G67260.1 | Thale cress | nucleus | 20.83 | 15.32 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 21.21 | 15.3 |
| KRH35497 | Soybean | nucleus | 21.97 | 15.26 |
| KRG91334 | Soybean | nucleus | 21.59 | 15.2 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 25.0 | 15.07 |
| Bra004097.1-P | Field mustard | nucleus | 19.7 | 14.99 |
| CDY07432 | Canola | nucleus | 19.7 | 14.77 |
| CDY28898 | Canola | nucleus | 19.7 | 14.69 |
| CDY62798 | Canola | nucleus | 22.73 | 14.6 |
| CDX82339 | Canola | nucleus | 23.11 | 14.39 |
| Bra001710.1-P | Field mustard | nucleus | 23.11 | 14.35 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 14.77 | 14.18 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 21.97 | 13.94 |
| AT3G18550.3 | Thale cress | nucleus | 22.73 | 13.82 |
| CDY52898 | Canola | nucleus | 21.97 | 13.65 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 13.26 | 11.86 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 14.02 | 11.82 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 17.8 | 11.72 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 18.18 | 10.57 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G002300.1 | EnsemblPlantsGene:TraesCS5D01G002300 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| SEG:seg | MapMan:15.5.19 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:2511199..2511993
Molecular Weight (calculated)
29211.6 Da
IEP (calculated)
10.348
GRAVY (calculated)
-0.741
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEMGMDFL WPHHHQHPPP PLPPSSQVPD AFSYYFYYPP FAAAAAATTD NPTPPAVSRS RASRSRAVVR KDRHSKICTA GGMRDRRMRL SLVVARRFFA
101: LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSLSEEDGS VLLDQDNNDH AMAMAADAET NKQQEQMPKA RRSPAPAAPR KKSKNGGAPV LLPDKKASRA
201: RARQRARERT ERNRLRSEAP APAPAPAGQP VVPAAACSNN YYEDGEQEPW ELGGVVFAKP RIQY
101: LQDKLGFDKA SKTVQWLLDR STAGINHLAA SMSLSEEDGS VLLDQDNNDH AMAMAADAET NKQQEQMPKA RRSPAPAAPR KKSKNGGAPV LLPDKKASRA
201: RARQRARERT ERNRLRSEAP APAPAPAGQP VVPAAACSNN YYEDGEQEPW ELGGVVFAKP RIQY
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.