Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G205600.1 | Wheat | cytosol | 98.55 | 98.91 |
| TraesCS5A01G207300.1 | Wheat | cytosol | 95.64 | 96.69 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 92.36 | 93.04 |
| EER96723 | Sorghum | nucleus | 58.18 | 59.7 |
| Os09t0410500-00 | Rice | nucleus | 57.82 | 58.89 |
| Zm00001d005737_P001 | Maize | cytosol | 58.18 | 57.97 |
| Zm00001d020433_P001 | Maize | nucleus | 50.91 | 55.34 |
| TraesCS2D01G019300.1 | Wheat | extracellular | 33.09 | 38.56 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 24.36 | 25.38 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 30.55 | 23.86 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 14.18 | 14.18 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 14.18 | 13.22 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 18.91 | 11.45 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 16.36 | 11.22 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 12.73 | 11.18 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 16.73 | 11.06 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G213400.1 | EnsemblPlantsGene:TraesCS5D01G213400 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF65 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5D:+:322577220..322578159
Molecular Weight (calculated)
30251.4 Da
IEP (calculated)
6.352
GRAVY (calculated)
-0.731
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYHPNPHG FWISREPPAQ VPNPASGFAV APPAHLDHQI QHYDHFFPGH GNQFNSETLE AVLMRPRPPA PPPAEMPPAN EARTGAVQAA GTGHARARKR
101: SFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSSESSRLNA ARAGEDGMSS LSSVEREGRR LKETELAAGS
201: GKGAADVEKA MRARGGGTSV LMEHRREMNG GFMSASMTGG EYYYDLGEMM CINAGECDDD GEYDEDGDFL DGMQY
101: SFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSSESSRLNA ARAGEDGMSS LSSVEREGRR LKETELAAGS
201: GKGAADVEKA MRARGGGTSV LMEHRREMNG GFMSASMTGG EYYYDLGEMM CINAGECDDD GEYDEDGDFL DGMQY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.