Factsheet for Os09t0410500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96723	Sorghum	nucleus	61.48	61.94
TraesCS5A01G207300.1	Wheat	cytosol	59.63	59.19
TraesCS5B01G205600.1	Wheat	cytosol	59.63	58.76
HORVU5Hr1G061270.1	Barley	nucleus	59.26	58.61
Zm00001d005737_P001	Maize	cytosol	59.63	58.33
Zm00001d020433_P001	Maize	nucleus	54.44	58.1
TraesCS5D01G213400.1	Wheat	cytosol	58.89	57.82
Os08t0432300-00	Rice	nucleus	38.52	35.14
Os03t0706500-01	Rice	nucleus	31.85	22.16
Os05t0513100-01	Rice	nucleus	17.41	15.99
Os01t0763200-01	Rice	cytosol	15.93	14.01
Os03t0785800-01	Rice	nucleus	17.41	13.17
Os07t0152000-01	Rice	nucleus	17.78	10.79
Os01t0755500-01	Rice	cytosol, mitochondrion	17.78	10.76
Os01t0213800-01	Rice	mitochondrion	19.26	8.98
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	2.59	3.37

Protein Annotations

MapMan:15.5.19	EntrezGene:4347031	UniProt:A0A0N7KQS6	ProteinID:BAT08042.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os09g0410500	EnsemblPlants:Os09t0410500-00	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF65	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000393C49B	RefSeq:XP_015611514.1
SEG:seg	:	:	:	:	:

Description

RETARDED PALEA 1Similar to teosinte-branched one. (Os09t0410500-00)

Coordinates

chr9:+:14566850..14568219

Molecular Weight (calculated)

29233.0 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.742

Length

270 amino acids

Sequence
(BLAST)

001: MLPYFPNLHH FCISQEAQPP PPPNPTTTMQ QQLDQQQQQQ QHQYDHFFSG HGQFNSETLE AVLCRPPRGA AADPAVPAAA AAAAVLTAAR NGGGGHGRAR
101: KRPFRTDRHS KIRTAQGVRD RRMRLSLDVA RDFFALQDRL GFDKASKTVD WLLTQSKPAI DRLAADPSSS SHRAAGDTRM SSAERGGDHH MVAVGAAGSG
201: KGDADKARGP RGGRSAPMEL GCELGRLVPA PVLGEYYYEL AEMMSNNTGG EGDDDGDYDD DGDFLDGMQY

Best Arabidopsis Sequence Match ( AT3G18550.2 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.