Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G213400.1 | Wheat | cytosol | 98.91 | 98.55 |
| TraesCS5A01G207300.1 | Wheat | cytosol | 96.35 | 97.06 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 93.07 | 93.41 |
| EER96723 | Sorghum | nucleus | 59.12 | 60.45 |
| Os09t0410500-00 | Rice | nucleus | 58.76 | 59.63 |
| Zm00001d005737_P001 | Maize | cytosol | 59.12 | 58.7 |
| Zm00001d020433_P001 | Maize | nucleus | 51.82 | 56.13 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 32.48 | 43.63 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 30.66 | 23.73 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 24.45 | 22.71 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 13.87 | 13.57 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 13.5 | 12.33 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 19.34 | 11.78 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 13.14 | 11.69 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 16.42 | 11.14 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 16.79 | 10.85 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G205600.1 | EnsemblPlantsGene:TraesCS5B01G205600 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF65 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5B:+:374191150..374191974
Molecular Weight (calculated)
30170.4 Da
IEP (calculated)
6.352
GRAVY (calculated)
-0.739
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPYHPNPHG FWISREPPAQ VPNPASGFAV APPAHLDHQI QHYDHFFPGH GNQFNSETLE AVLMRPRPPA PPPAEMPPAN EARTGAVQAA GTGHARARKR
101: PFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSESSRLNAA RAGEDGMSSL SSVEREGRRL KETELATGSG
201: KGAADVEKAM RARGGGTSVL MEHRREMNGG LMSASMTGGE YYYDLGEMMC INAGECDDDG EYDEDGDFLD GMQY
101: PFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSESSRLNAA RAGEDGMSSL SSVEREGRRL KETELATGSG
201: KGAADVEKAM RARGGGTSVL MEHRREMNGG LMSASMTGGE YYYDLGEMMC INAGECDDDG EYDEDGDFLD GMQY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.