Factsheet for Os07t0152000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0398100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Os05t0398100-01	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0785800-01	Rice	nucleus	41.8	52.1
GSMUA_Achr7P01160_001	Banana	nucleus	44.72	52.09
GSMUA_Achr4P31520_001	Banana	nucleus	42.47	49.74
GSMUA_Achr5P02530_001	Banana	nucleus	42.47	49.48
GSMUA_Achr4P22960_001	Banana	nucleus	42.25	49.21
GSMUA_Achr2P12990_001	Banana	nucleus	41.8	49.21
AT1G30210.1	Thale cress	nucleus	32.13	44.14
VIT_10s0003g03910.t01	Wine grape	nucleus	43.82	43.92
AT4G18390.1	Thale cress	nucleus	34.61	42.19
PGSC0003DMT400051253	Potato	nucleus	31.69	41.23
KRH58674	Soybean	nucleus	41.35	38.49
KRH42567	Soybean	nucleus	40.0	38.03
KRH11155	Soybean	nucleus	43.6	37.96
Solyc08g048390.1.1	Tomato	nucleus	32.36	37.21
KRH21093	Soybean	nucleus	43.37	36.28
Solyc08g048370.2.1	Tomato	cytosol	26.52	36.2
Bra013304.1-P	Field mustard	nucleus, plastid	19.1	35.56
CDX78849	Canola	nucleus, plastid	19.1	35.56
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	13.48	28.85
Os05t0513100-01	Rice	nucleus	18.2	27.55
Os01t0763200-01	Rice	cytosol	17.3	25.08
Os09t0410500-00	Rice	nucleus	10.79	17.78
Os01t0755500-01	Rice	cytosol, mitochondrion	16.63	16.59
Os03t0706500-01	Rice	nucleus	14.38	16.49
Os01t0213800-01	Rice	mitochondrion	21.12	16.23
Os08t0432300-00	Rice	nucleus	10.79	16.22

Protein Annotations

MapMan:15.5.19	EntrezGene:4342416	ProteinID:BAF20819.1	ProteinID:BAT00093.1	InterPro:CYC/TB1_R_domain	ProteinID:EAZ38718.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	EnsemblPlantsGene:Os07g0152000
EnsemblPlants:Os07t0152000-01	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF2
UniProt:Q0D8K4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0000E129CF	RefSeq:XP_015644886.1	SEG:seg

Description

TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21Transcription factor , Cold tolerance (Os07t0152000-01)

Coordinates

chr7:+:2751213..2756586

Molecular Weight (calculated)

47258.7 Da

IEP (calculated)

9.498

GRAVY (calculated)

-0.566

Length

445 amino acids

Sequence
(BLAST)

001: MELAGSNNKR GRVRGPNDDD DDAGEPDAKR HHHQLLLPWP QQQQQQHPAS RIYRVSRASG GKDRHSKVYT AKGIRDRRVR LSVSTAIQFY DLQDRLGYDQ
101: PSKAIEWLIK AAAAAIDKLP SLDTASFPTN PASSAAVAAA AAPPLPHAER EQQQQLTKSG CSSTSETSKG SVLSLSRSES RVKARERARE RSSAAAAAAS
201: KDAGDDAATP TAPTAAPASS QAASFTELLT GMAAANASPA DHKQQQAWQP MTVAAATADY IGFAAAAAPH TQPRKSAAGH HSAMPHTFAS PAPHLANITP
301: IAMAPAQHFT LTPAAAEHHA EMTHYSFDHF MPVHAAAAAA AAASTPAGGD YNLNFSMSSG LVGVHSRGTL QSNSQSHLSS HHHHHHQQQQ QQQQLQRLSA
401: PLDAPNIPFL FSPAAAPTAA DTQFAAALQL WDGFRHADIK EKGKH

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.