Factsheet for Os12t0616400-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0398100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Os05t0398100-01	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013304.1-P	Field mustard	nucleus, plastid	19.23	16.74
CDX78849	Canola	nucleus, plastid	19.23	16.74
GSMUA_Achr4P31520_001	Banana	nucleus	26.92	14.74
GSMUA_Achr5P02530_001	Banana	nucleus	25.96	14.14
GSMUA_Achr2P12990_001	Banana	nucleus	25.0	13.76
GSMUA_Achr7P01160_001	Banana	nucleus	25.0	13.61
Os07t0152000-01	Rice	nucleus	28.85	13.48
VIT_10s0003g03910.t01	Wine grape	nucleus	27.88	13.06
Os03t0785800-01	Rice	nucleus	22.12	12.89
KRH42567	Soybean	nucleus	28.37	12.61
KRH58674	Soybean	nucleus	28.37	12.34
GSMUA_Achr4P22960_001	Banana	nucleus	22.6	12.3
AT1G30210.1	Thale cress	nucleus	18.75	12.04
KRH11155	Soybean	nucleus	28.85	11.74
Solyc08g048390.1.1	Tomato	nucleus	21.63	11.63
PGSC0003DMT400051253	Potato	nucleus	18.27	11.11
AT4G18390.1	Thale cress	nucleus	19.23	10.96
KRH21093	Soybean	nucleus	27.88	10.9
Solyc08g048370.2.1	Tomato	cytosol	12.98	8.28
Os01t0213800-01	Rice	mitochondrion	14.42	5.18
Os01t0755500-01	Rice	cytosol, mitochondrion	9.62	4.48
Os05t0513100-01	Rice	nucleus	5.29	3.74
Os01t0763200-01	Rice	cytosol	4.33	2.93
Os08t0432300-00	Rice	nucleus	3.85	2.7
Os09t0410500-00	Rice	nucleus	3.37	2.59
Os03t0706500-01	Rice	nucleus	2.88	1.55

Protein Annotations

MapMan:35.1	ProteinID:BAT18100.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:Os12g0616400	EnsemblPlants:Os12t0616400-01	PANTHER:PTHR31072	PANTHER:PTHR31072:SF23	UniParc:UPI0000DD9F71	SEG:seg

Description

PROLIFERATING CELL FACTOR 8Similar to Isoform 2 of Transcription factor PCF8. (Os12t0616400-01)

Coordinates

chr12:+:26155007..26158687

Molecular Weight (calculated)

21676.4 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.287

Length

208 amino acids

Sequence
(BLAST)

001: MEEVVVGGKE RKRPRGALDC SFALPAAASS PPPPAADDAE VSTSETSKSS VLSLANAPCD NGGGAFAELL HCSNTNGSKP LQQQQQATLA YYAAAQSAHM
101: AAPMSFEVMA MPPHLAFSQE QQQHATVAAF DRGTLQSNAS LWPPPPQPPP SQHPFLLQRF AAAPAEVAGL PFFLAGGVGG AAAAAPAATT NGGERRLQLW
201: DFKEERKT

Best Arabidopsis Sequence Match ( AT2G42360.1 )
(BLAST)

001: MSSNDRDHRR FNSDHHSFWP NPSTYDLNSK IMLAAVASLS GVILIVFALH LYARFVLRRR REAFRGLPVI FRHPFEMPKR GLNPTVIASL PTFTVGATDG
101: VAASATECAV CLSVLKEQDK ARELPNCKHI FHVDCVDTWL TTCSTCPVCR TEVEPRPRLE PEPREGPVGT APQLLVETRL NLTVEAASSS SSDNKTVVSP
201: ASRLNSFRKI LTRERSSNRI NHSCPDQDRV ADLERH

Arabidopsis Description

ATL41E3 ubiquitin-protein ligase ATL41 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLC3]
SUBAcon: [endoplasmic reticulum,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.