Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01793 | Canola | nucleus | 72.98 | 74.22 |
| Bra004212.1-P | Field mustard | nucleus | 69.64 | 73.31 |
| CDY12633 | Canola | nucleus | 65.74 | 73.29 |
| CDY46042 | Canola | nucleus | 69.92 | 72.54 |
| Bra034010.1-P | Field mustard | nucleus | 69.64 | 72.25 |
| CDX96104 | Canola | nucleus | 70.47 | 72.08 |
| CDY28898 | Canola | nucleus | 70.19 | 71.19 |
| CDY07432 | Canola | nucleus | 69.36 | 70.74 |
| Bra004097.1-P | Field mustard | nucleus | 68.25 | 70.61 |
| PGSC0003DMT400008673 | Potato | nucleus | 12.81 | 29.3 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 18.66 | 27.8 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.38 | 27.73 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.37 | 26.23 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 22.84 | 24.85 |
| KRH01497 | Soybean | plastid | 22.56 | 21.89 |
| KRH45185 | Soybean | plastid | 22.28 | 21.62 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 15.32 | 20.83 |
| AT1G68800.2 | Thale cress | nucleus | 20.61 | 20.44 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 15.32 | 20.15 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 19.78 | 19.89 |
| KRG91334 | Soybean | nucleus | 20.61 | 19.73 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.22 | 19.6 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 19.22 | 19.49 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 15.88 | 19.32 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 18.94 | 19.32 |
| KRH18263 | Soybean | plastid | 21.73 | 18.62 |
| KRG93829 | Soybean | nucleus, plastid | 21.45 | 18.51 |
| KRH35497 | Soybean | nucleus | 19.5 | 18.42 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.5 | 18.42 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 18.66 | 18.31 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 15.04 | 18.18 |
| Zm00001d013467_P001 | Maize | nucleus | 18.11 | 18.11 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 16.43 | 17.88 |
| AT4G18390.1 | Thale cress | nucleus | 18.11 | 17.81 |
| Os03t0706500-01 | Rice | nucleus | 19.22 | 17.78 |
| AT1G30210.1 | Thale cress | nucleus | 15.32 | 16.98 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 10.31 | 15.29 |
| AT2G31070.1 | Thale cress | nucleus | 14.21 | 14.13 |
| AT1G53230.1 | Thale cress | nucleus | 15.32 | 14.07 |
| AT3G18550.3 | Thale cress | nucleus | 16.71 | 13.82 |
| AT3G15030.1 | Thale cress | nucleus | 15.88 | 13.57 |
| AT3G02150.2 | Thale cress | nucleus | 13.37 | 13.52 |
| AT5G60970.1 | Thale cress | nucleus | 13.09 | 13.06 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:3767658 | ProteinID:AAG00255.1 | ProteinID:AEE34617.1 | ArrayExpress:AT1G67260 | EnsemblPlantsGene:AT1G67260 |
| RefSeq:AT1G67260 | TAIR:AT1G67260 | RefSeq:AT1G67260-TAIR-G | EnsemblPlants:AT1G67260.1 | TAIR:AT1G67260.1 | InterPro:CYC/TB1_R_domain |
| EMBL:DR751457 | EMBL:DR751458 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 |
| RefSeq:NP_001077781.1 | PFAM:PF03634 | PO:PO:0000229 | PO:PO:0007601 | PO:PO:0007602 | PFscan:PS51369 |
| PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | UniProt:Q9FYG7 | Symbol:TCP1 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00000A5BC7 | SEG:seg | : | : | : |
Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
Coordinates
chr1:-:25168228..25169307
Molecular Weight (calculated)
40756.6 Da
IEP (calculated)
5.087
GRAVY (calculated)
-0.799
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.