Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78321 | Canola | nucleus, plastid | 73.97 | 72.76 |
| Bra005967.1-P | Field mustard | nucleus, plastid | 73.97 | 72.76 |
| CDX81083 | Canola | nucleus, plastid | 73.14 | 72.54 |
| AT5G60970.1 | Thale cress | nucleus | 67.77 | 45.56 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 37.19 | 26.16 |
| Solyc03g115010.1.1 | Tomato | plastid | 36.36 | 25.81 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 32.64 | 23.03 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 28.1 | 22.74 |
| AT3G02150.2 | Thale cress | nucleus | 32.64 | 22.25 |
| AT1G30210.1 | Thale cress | nucleus | 23.14 | 17.28 |
| AT4G18390.1 | Thale cress | nucleus | 23.55 | 15.62 |
| AT2G31070.1 | Thale cress | nucleus | 21.9 | 14.68 |
| AT1G53230.1 | Thale cress | nucleus | 22.73 | 14.07 |
| AT3G15030.1 | Thale cress | nucleus | 24.38 | 14.05 |
| AT1G68800.2 | Thale cress | nucleus | 16.12 | 10.77 |
| AT1G67260.1 | Thale cress | nucleus | 15.29 | 10.31 |
| AT3G18550.3 | Thale cress | nucleus | 12.4 | 6.91 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:830701 | ProteinID:AED91241.1 | ProteinID:ANM69189.1 | ArrayExpress:AT5G08070 | EnsemblPlantsGene:AT5G08070 |
| RefSeq:AT5G08070 | TAIR:AT5G08070 | RefSeq:AT5G08070-TAIR-G | EnsemblPlants:AT5G08070.1 | TAIR:AT5G08070.1 | EMBL:BT029995 |
| ProteinID:CAB93708.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045962 | InterPro:IPR017887 |
| RefSeq:NP_001318505.1 | RefSeq:NP_196424.1 | PFAM:PF03634 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000056 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF5 | UniProt:Q9LEZ9 |
| Symbol:TCP17 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000AA16E | SEG:seg | : |
Description
TCP17Transcription factor TCP17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEZ9]
Coordinates
chr5:+:2584358..2586035
Molecular Weight (calculated)
27413.4 Da
IEP (calculated)
9.359
GRAVY (calculated)
-0.543
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
101: HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
201: NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
101: HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
201: NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.