Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74272 | Canola | nucleus | 72.11 | 80.0 |
| CDX91977 | Canola | nucleus | 72.11 | 80.0 |
| Bra039158.1-P | Field mustard | nucleus | 69.3 | 79.61 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 69.3 | 61.96 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 69.58 | 57.58 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 20.56 | 51.41 |
| Bra001032.1-P | Field mustard | nucleus | 65.63 | 43.31 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 37.46 | 38.11 |
| KRH45058 | Soybean | nucleus | 36.06 | 36.06 |
| KRG93654 | Soybean | nucleus | 37.75 | 35.83 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 20.85 | 33.95 |
| KRH01308 | Soybean | cytosol | 35.77 | 33.07 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 22.25 | 32.64 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 24.79 | 32.0 |
| Os05t0513100-01 | Rice | nucleus | 25.63 | 30.95 |
| Zm00001d038683_P001 | Maize | cytosol | 25.63 | 30.54 |
| EES18493 | Sorghum | cytosol | 25.35 | 30.2 |
| TraesCS3A01G302900.1 | Wheat | nucleus | 22.82 | 29.14 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 22.82 | 29.14 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 22.54 | 29.09 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 22.82 | 28.93 |
| EES03657 | Sorghum | nucleus | 23.38 | 28.72 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 23.38 | 28.42 |
| Zm00001d043368_P001 | Maize | cytosol | 22.54 | 28.27 |
| Os01t0763200-01 | Rice | cytosol | 23.94 | 27.69 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 23.66 | 27.45 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 23.38 | 26.95 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 23.66 | 26.84 |
| AT5G60970.1 | Thale cress | nucleus | 26.48 | 26.11 |
| AT1G30210.1 | Thale cress | nucleus | 19.72 | 21.6 |
| AT4G18390.1 | Thale cress | nucleus | 20.0 | 19.45 |
| AT3G15030.1 | Thale cress | nucleus | 21.13 | 17.86 |
| AT2G31070.1 | Thale cress | nucleus | 18.03 | 17.73 |
| AT1G53230.1 | Thale cress | nucleus | 18.31 | 16.62 |
| AT1G67260.1 | Thale cress | nucleus | 13.52 | 13.37 |
| AT1G68800.2 | Thale cress | nucleus | 11.27 | 11.05 |
| AT3G18550.3 | Thale cress | nucleus | 11.83 | 9.68 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:821061 | ProteinID:AAF02122.1 | ProteinID:AAF14823.1 | EMBL:AB014465 | ProteinID:AEE73769.1 |
| ProteinID:AEE73770.1 | ArrayExpress:AT3G02150 | EnsemblPlantsGene:AT3G02150 | RefSeq:AT3G02150 | TAIR:AT3G02150 | RefSeq:AT3G02150-TAIR-G |
| EnsemblPlants:AT3G02150.2 | TAIR:AT3G02150.2 | EMBL:AY085519 | EMBL:BT001982 | EMBL:BT008839 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009653 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0031347 | GO:GO:0045962 | GO:GO:0048366 | InterPro:IPR017887 | RefSeq:NP_566164.1 | RefSeq:NP_850501.1 |
| PFAM:PF03634 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51369 | Symbol:PTF1 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF5 | UniProt:Q9S7W5 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00000AC08B | SEG:seg | : | : | : |
Description
TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
Coordinates
chr3:+:390720..392767
Molecular Weight (calculated)
39612.0 Da
IEP (calculated)
7.842
GRAVY (calculated)
-0.802
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.