Factsheet for Bra039158.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60475	Canola	endoplasmic reticulum, golgi	97.41	75.82
AT3G02150.2	Thale cress	nucleus	79.61	69.3
Solyc02g065800.1.1	Tomato	cytosol, plastid	24.27	52.82
Bra001032.1-P	Field mustard	nucleus	72.49	41.64
VIT_14s0068g00330.t01	Wine grape	nucleus	41.75	36.96
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	23.95	33.95
KRG93654	Soybean	nucleus	40.78	33.69
KRH45058	Soybean	nucleus	37.22	32.39
Bra005967.1-P	Field mustard	nucleus, plastid	25.24	31.71
Zm00001d010730_P001	Maize	cytosol, plastid	27.18	30.55
KRH01308	Soybean	cytosol	37.86	30.47
Zm00001d038683_P001	Maize	cytosol	28.48	29.53
Os05t0513100-01	Rice	nucleus	27.83	29.25
HORVU1Hr1G077080.1	Barley	nucleus	27.51	29.11
EES18493	Sorghum	cytosol	27.83	28.86
TraesCS3D01G298900.1	Wheat	nucleus	25.57	28.73
TraesCS1A01G332600.1	Wheat	nucleus	28.16	28.43
TraesCS3A01G302900.1	Wheat	nucleus	25.57	28.42
EES03657	Sorghum	nucleus	26.54	28.37
TraesCS3B01G333400.1	Wheat	nucleus	25.57	28.21
TraesCS1B01G346300.1	Wheat	nucleus	27.83	27.92
Zm00001d043368_P001	Maize	cytosol	25.57	27.92
TraesCS1D01G335300.1	Wheat	nucleus	28.16	27.8
HORVU3Hr1G073830.1	Barley	nucleus	24.92	27.7
Os01t0763200-01	Rice	cytosol	26.86	27.04
Bra029344.1-P	Field mustard	nucleus, plastid	26.21	26.91
Bra012990.1-P	Field mustard	nucleus	29.77	25.14
Bra010789.1-P	Field mustard	nucleus	20.71	20.78
Bra032365.1-P	Field mustard	nucleus	21.36	20.75
Bra012600.1-P	Field mustard	nucleus	22.65	18.32
Bra030952.1-P	Field mustard	nucleus	20.06	17.97
Bra021586.1-P	Field mustard	nucleus	18.77	16.57
Bra018280.1-P	Field mustard	nucleus	18.12	16.05
Bra027284.1-P	Field mustard	nucleus	20.39	15.52
Bra001579.1-P	Field mustard	nucleus	20.39	15.48
Bra037579.1-P	Field mustard	nucleus	13.59	14.74
Bra004212.1-P	Field mustard	nucleus	15.86	14.37
Bra034010.1-P	Field mustard	nucleus	15.53	13.87
Bra004097.1-P	Field mustard	nucleus	15.21	13.54
Bra038350.1-P	Field mustard	nucleus	11.97	11.04
Bra001710.1-P	Field mustard	nucleus	14.24	10.35
Bra013304.1-P	Field mustard	nucleus, plastid	3.56	4.6

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra039158	EnsemblPlants:Bra039158.1	EnsemblPlants:Bra039158.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4FDI7	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002547653	SEG:seg	:

Description

AT3G02150 (E=2e-101) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor

Coordinates

chrA05:-:23709565..23710494

Molecular Weight (calculated)

34453.2 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.706

Length

309 amino acids

Sequence
(BLAST)

001: MNTGPWRDAN DDVSGGTRTR RNGEVEEDSE EAVVVAVATS GKPVIKKPPT SISSSSSSWM KSKDRRIVRV SRAFGGKDRH SKVCTLRGLR DRRVRLSVPT
101: AIQLYDLQER LGLDQPSKAV DWLLNAAKDE IDELPPLPVS PETFSLFNHH QAFLNLSQPP GQDPTQLGFK INGCVEESNT TTSREETNNN HIGSYGTYQY
201: MEQHQQQHTR FQADYPHHQH QLHSLVPIQS QFLVCPVTTS STTTTIQSLF PSSTSAGSRT METTDPRQMV SHFQMPLMGS SSSSQNISTL YSLLHGNSNP
301: MPSVQFDRK

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.