Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18525 | Canola | nucleus | 98.95 | 99.65 |
| CDX95517 | Canola | nucleus | 96.84 | 97.53 |
| Bra001710.1-P | Field mustard | nucleus | 72.98 | 48.94 |
| AT3G18550.3 | Thale cress | nucleus | 68.07 | 44.7 |
| PGSC0003DMT400010380 | Potato | nucleus | 24.56 | 25.09 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 20.7 | 21.61 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 19.3 | 20.83 |
| KRH03810 | Soybean | nucleus | 27.37 | 20.53 |
| Solyc03g119770.2.1 | Tomato | nucleus | 24.91 | 20.52 |
| KRH56692 | Soybean | nucleus | 26.67 | 20.21 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 20.7 | 20.0 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 25.61 | 19.95 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 20.35 | 19.53 |
| KRH63057 | Soybean | nucleus | 26.32 | 19.48 |
| PGSC0003DMT400014572 | Potato | nucleus | 24.91 | 18.78 |
| KRH54810 | Soybean | nucleus | 25.96 | 18.69 |
| Solyc06g069240.1.1 | Tomato | nucleus | 25.96 | 18.23 |
| Bra038350.1-P | Field mustard | nucleus | 21.4 | 18.21 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 22.46 | 18.08 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 22.11 | 17.9 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 22.11 | 17.9 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 21.75 | 17.37 |
| Zm00001d013467_P001 | Maize | nucleus | 21.75 | 17.27 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 22.11 | 17.21 |
| Os03t0706500-01 | Rice | nucleus | 23.16 | 17.01 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 22.46 | 16.84 |
| Bra004212.1-P | Field mustard | nucleus | 18.6 | 15.54 |
| Bra034010.1-P | Field mustard | nucleus | 18.6 | 15.32 |
| Bra032365.1-P | Field mustard | nucleus | 16.84 | 15.09 |
| Bra004097.1-P | Field mustard | nucleus | 17.89 | 14.7 |
| Bra039158.1-P | Field mustard | nucleus | 14.74 | 13.59 |
| Bra005967.1-P | Field mustard | nucleus, plastid | 11.58 | 13.41 |
| Bra010789.1-P | Field mustard | nucleus | 14.39 | 13.31 |
| Bra012600.1-P | Field mustard | nucleus | 17.19 | 12.83 |
| Bra029344.1-P | Field mustard | nucleus, plastid | 12.63 | 11.96 |
| Bra012990.1-P | Field mustard | nucleus | 14.74 | 11.48 |
| Bra018280.1-P | Field mustard | nucleus | 13.33 | 10.89 |
| Bra001579.1-P | Field mustard | nucleus | 14.39 | 10.07 |
| Bra030952.1-P | Field mustard | nucleus | 11.93 | 9.86 |
| Bra027284.1-P | Field mustard | nucleus | 14.04 | 9.85 |
| Bra021586.1-P | Field mustard | nucleus | 11.93 | 9.71 |
| Bra001032.1-P | Field mustard | nucleus | 14.74 | 7.81 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 6.32 | 7.53 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlantsGene:Bra037579 | EnsemblPlants:Bra037579.1 | EnsemblPlants:Bra037579.1-P | InterPro:CYC/TB1_R_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M4F916 | PFAM:PF03634 |
| PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI0002545044 | SEG:seg | : | : | : | : |
Description
AT3G18550 (E=6e-092) BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1); transcription factor
Coordinates
chrA01:-:22069065..22070655
Molecular Weight (calculated)
32662.6 Da
IEP (calculated)
10.087
GRAVY (calculated)
-0.974
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNAKKPSRT DRHSKIKTAK GTRDRRMRLS LDVAKELFGL QDMLGFDKAS KTVEWLLTQA KPEIIKIANS LSNQFKHGGF SSGDDSQTRP ALGSTETSSD
101: LCEFASVWTV EDRGSNTSMT ENKVDGRTMR GKRKMSQRTP ILKEMSKDAR AKARERAKDR TMEKIMKRRR PQVNAVEEVE AHNQHDEVVK NNNSGVNWTT
201: SFEVTPCGEN MEELCKNNRF AVYNDFVVNK KDHISEESYN MISQLNSSFP MLTPHRSQGA ATSIEQQQQQ QVRDVHHFLY NYHNM
101: LCEFASVWTV EDRGSNTSMT ENKVDGRTMR GKRKMSQRTP ILKEMSKDAR AKARERAKDR TMEKIMKRRR PQVNAVEEVE AHNQHDEVVK NNNSGVNWTT
201: SFEVTPCGEN MEELCKNNRF AVYNDFVVNK KDHISEESYN MISQLNSSFP MLTPHRSQGA ATSIEQQQQQ QVRDVHHFLY NYHNM
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.