Factsheet for Bra005967.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78321	Canola	nucleus, plastid	99.19	99.19
CDX81083	Canola	nucleus, plastid	94.72	95.49
AT5G08070.1	Thale cress	nucleus, plastid	72.76	73.97
Bra029344.1-P	Field mustard	nucleus, plastid	62.2	50.83
Bra012990.1-P	Field mustard	nucleus	65.45	43.99
PGSC0003DMT400063327	Potato	nucleus, plastid	36.99	26.45
Solyc03g115010.1.1	Tomato	plastid	35.77	25.81
Bra039158.1-P	Field mustard	nucleus	31.71	25.24
GSMUA_Achr6P27420_001	Banana	nucleus	28.46	23.41
GSMUA_Achr4P32850_001	Banana	nucleus	32.11	23.03
Bra032365.1-P	Field mustard	nucleus	22.76	17.61
Bra021586.1-P	Field mustard	nucleus	23.58	16.57
Bra010789.1-P	Field mustard	nucleus	20.73	16.56
Bra030952.1-P	Field mustard	nucleus	21.54	15.36
Bra027284.1-P	Field mustard	nucleus	24.8	15.02
Bra001579.1-P	Field mustard	nucleus	24.39	14.74
Bra001032.1-P	Field mustard	nucleus	30.08	13.75
Bra018280.1-P	Field mustard	nucleus	19.11	13.47
Bra012600.1-P	Field mustard	nucleus	20.73	13.35
Bra004212.1-P	Field mustard	nucleus	16.26	11.73
Bra037579.1-P	Field mustard	nucleus	13.41	11.58
Bra034010.1-P	Field mustard	nucleus	15.45	10.98
Bra038350.1-P	Field mustard	nucleus	14.63	10.75
Bra004097.1-P	Field mustard	nucleus	15.04	10.66
Bra001710.1-P	Field mustard	nucleus	13.82	8.0
Bra013304.1-P	Field mustard	nucleus, plastid	2.44	2.51

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra005967	EnsemblPlants:Bra005967.1	EnsemblPlants:Bra005967.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009965	GO:GO:0009987	GO:GO:0030154	GO:GO:0045962
InterPro:IPR017887	UniProt:M4CP29	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF5
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000253F738	SEG:seg	:	:

Description

AT5G08070 (E=7e-067) TCP17 | TCP17 (TCP DOMAIN PROTEIN 17); transcription factor

Coordinates

chrA03:+:1433460..1434200

Molecular Weight (calculated)

27369.0 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.518

Length

246 amino acids

Sequence
(BLAST)

001: MRTNSMGIKQ EGDNQYQATS LSSLRQNPRI VRASRIFGGK DRHSKVCTVR GLRDRRIRLS ATTAIQLYDL QERLGLSQPS KVIDWLLEAA QNDVAMLPPL
101: QFPPGFHPNL AAAAAAGESF PGIFESFDLG SCSSRTDTIQ REGLNLESHG FDIDHHFFSN SNHRDKLYFP SSSSCHYNLG LLQQSLLDQS GNVTVALSNN
201: NNLNPQTVET MSSLFPRYPL FLEGGDHQLQ LFSSNSNSSK QTDHVE

Best Arabidopsis Sequence Match ( AT5G08070.1 )
(BLAST)

001: MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
101: HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
201: NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE

Arabidopsis Description

TCP17Transcription factor TCP17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEZ9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.