Factsheet for PGSC0003DMT400063327

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115010.1.1	Tomato	plastid	90.41	91.2
PGSC0003DMT400010453	Potato	nucleus, plastid	38.08	42.95
PGSC0003DMT400003453	Potato	nucleus, plastid	32.27	39.22
CDX81083	Canola	nucleus, plastid	26.45	37.3
AT5G08070.1	Thale cress	nucleus, plastid	26.16	37.19
Bra005967.1-P	Field mustard	nucleus, plastid	26.45	36.99
CDX78321	Canola	nucleus, plastid	26.45	36.99
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	23.26	36.7
KRH54711	Soybean	plastid	40.41	35.64
KRH63215	Soybean	nucleus, plastid	39.53	35.14
AT5G60970.1	Thale cress	nucleus	34.59	33.06
Bra029344.1-P	Field mustard	nucleus, plastid	28.78	32.89
CDY47005	Canola	nucleus, plastid	28.78	32.89
CDY68618	Canola	nucleus, plastid	28.78	32.78
Bra012990.1-P	Field mustard	nucleus	34.59	32.51
CDY02180	Canola	nucleus	34.59	32.51
CDY58696	Canola	nucleus	34.3	32.42
KRH03150	Soybean	nucleus, plastid	36.63	32.39
GSMUA_Achr4P32850_001	Banana	nucleus	31.98	32.07
GSMUA_Achr6P27420_001	Banana	nucleus	26.74	30.77
KRH56798	Soybean	nucleus	34.59	30.43
PGSC0003DMT400051253	Potato	nucleus	21.51	21.64
PGSC0003DMT400024329	Potato	nucleus	17.73	19.61
PGSC0003DMT400008673	Potato	nucleus	8.72	19.11
PGSC0003DMT400059117	Potato	nucleus	16.86	17.37
PGSC0003DMT400032269	Potato	nucleus	19.48	16.75
PGSC0003DMT400039786	Potato	nucleus	18.9	15.44
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	9.88	14.29
PGSC0003DMT400010380	Potato	nucleus	11.05	13.62
PGSC0003DMT400002153	Potato	nucleus	12.21	11.86
PGSC0003DMT400014572	Potato	nucleus	12.5	11.38
PGSC0003DMT400019324	Potato	nucleus	11.92	10.76
PGSC0003DMT400068478	Potato	nucleus	15.99	10.56

Protein Annotations

EntrezGene:102588121	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1CAH5	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400024632	PGSC:PGSC0003DMG400024632	EnsemblPlants:PGSC0003DMT400063327	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF24	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002956F75	RefSeq:XP_006345116.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024632]

Coordinates

chr3:-:54995477..54997193

Molecular Weight (calculated)

39062.4 Da

IEP (calculated)

5.936

GRAVY (calculated)

-1.005

Length

344 amino acids

Sequence
(BLAST)

001: MNSSSGNNFQ TKQESNDSKL SSKTTSAPSS SRQWGVNKNP RIVRVSRTFG GKDRHSKVCT IRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLE
101: ATKLDIDTLP PLPVPPEYFT RFQQPPHEEY SDLQQVRSQW FNANSAPYLD HGKNKSIASN HHEESNQEDN HVFTLGNHRS SNLPAMPFNS YNYQWDDQPN
201: SNLSLGHFGH NNSFSSQIDD DHQSHQNTSF PLSLGSSSSP FPSSSQLYFN PITTTFQPIV PSPNYMTNHH PIDPRANMNH FNFLSSNTSH NNPLVMPTLN
301: LISSQIKPFS LNDDPRWMSS RDDDDDDDDD DDDDDNQPHE GRAI

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.