CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54711	Soybean	plastid	91.21	90.51
KRH03150	Soybean	nucleus, plastid	50.65	50.39
KRH56798	Soybean	nucleus	49.35	48.85
Solyc03g115010.1.1	Tomato	plastid	35.4	40.18
PGSC0003DMT400063327	Potato	nucleus, plastid	35.14	39.53
KRH45058	Soybean	nucleus	34.37	37.46
GSMUA_Achr4P32850_001	Banana	nucleus	31.52	35.57
KRH01308	Soybean	cytosol	34.11	34.38
GSMUA_Achr6P27420_001	Banana	nucleus	26.36	34.11
KRG93654	Soybean	nucleus	32.56	33.69
KRH27017	Soybean	nucleus	18.09	20.41
KRH22307	Soybean	nucleus	18.09	20.35
KRH25697	Soybean	nucleus	14.99	19.93
KRH27317	Soybean	nucleus	19.38	19.89
KRH55125	Soybean	nucleus	19.38	19.18
KRH21998	Soybean	nucleus	19.38	19.08
KRH55819	Soybean	nucleus	16.28	18.92
KRH26201	Soybean	nucleus	19.38	18.89
KRH42567	Soybean	nucleus	21.71	17.95
KRH58674	Soybean	nucleus	21.96	17.78
KRH11155	Soybean	nucleus	20.67	15.66
KRH01497	Soybean	plastid	14.47	15.14
KRH21093	Soybean	nucleus	20.67	15.04
KRH45185	Soybean	plastid	14.21	14.86
KRH56692	Soybean	nucleus	12.92	13.3
KRH63057	Soybean	nucleus	12.4	12.47
KRH18263	Soybean	plastid	12.92	11.93
KRH03810	Soybean	nucleus	11.63	11.84
KRH54810	Soybean	nucleus	11.89	11.62
KRG93829	Soybean	nucleus, plastid	12.4	11.54
KRG91334	Soybean	nucleus	10.34	10.67
KRH35497	Soybean	nucleus	10.34	10.53

Protein Annotations

EntrezGene:100788984	MapMan:15.5.19	EMBL:ACUP02002644	EnsemblPlantsGene:GLYMA_04G161400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:K7KKH4	EnsemblPlants:KRH63215	ProteinID:KRH63215	ProteinID:KRH63215.1
ProteinID:KRH63216.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF24	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0002960A87	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:40001447..40004338

Molecular Weight (calculated)

42977.2 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.625

Length

387 amino acids

Sequence
(BLAST)

001: MIMMMASSRE GRQAKQEGDT TNIDKFSQAS STSRQWSAFR NPRIVRVSRS FGGKDRHSKV CTIRGLRDRR IRLSVPTAIQ LYDLQDKLGL SQPSKVIDWL
101: LEATKFDIDK LPPLQFPQGF GQFQHPQTLL PFHDSSAASH QLSLGPFCDA SSTFVRDGGI QNLMAKSRYW ENIDSMSRLR GNKEAEKGKW IKTSEQENHD
201: QDGVVGGYNS LQVSTQRLFP MRSSSTTTTT THSLLPGLFN NSMPYNSYNS EPSSLSLSQF GSHGLFPTQQ VDPNPSSGNN GVQFQSSFPL PSSGSQLFFG
301: SSSATPSMFT TYAPFIAPSV DTDPRQFNHI QFLNSGSHIL PHPPLIPSLH HSFNSHVRPF PEAPFSSKLL DSNSSNRSQE NHKGSTS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.