CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56798	Soybean	nucleus	86.12	85.68
KRH63215	Soybean	nucleus, plastid	50.39	50.65
KRH54711	Soybean	plastid	50.64	50.51
Solyc03g115010.1.1	Tomato	plastid	33.42	38.12
PGSC0003DMT400063327	Potato	nucleus, plastid	32.39	36.63
KRH45058	Soybean	nucleus	32.13	35.21
KRG93654	Soybean	nucleus	32.65	33.96
KRH01308	Soybean	cytosol	32.13	32.55
GSMUA_Achr4P32850_001	Banana	nucleus	28.02	31.78
GSMUA_Achr6P27420_001	Banana	nucleus	24.42	31.77
KRH25697	Soybean	nucleus	16.45	21.99
KRH27017	Soybean	nucleus	17.74	20.12
KRH22307	Soybean	nucleus	17.48	19.77
KRH55819	Soybean	nucleus	16.71	19.52
KRH27317	Soybean	nucleus	17.99	18.57
KRH55125	Soybean	nucleus	18.25	18.16
KRH21998	Soybean	nucleus	17.74	17.56
KRH26201	Soybean	nucleus	17.22	16.88
KRH42567	Soybean	nucleus	20.05	16.67
KRH58674	Soybean	nucleus	19.79	16.11
KRH11155	Soybean	nucleus	19.02	14.48
KRH21093	Soybean	nucleus	19.02	13.91
KRH56692	Soybean	nucleus	13.11	13.56
KRH63057	Soybean	nucleus	13.11	13.25
KRH03810	Soybean	nucleus	12.6	12.89
KRH54810	Soybean	nucleus	13.11	12.88
KRH01497	Soybean	plastid	11.57	12.16
KRH45185	Soybean	plastid	11.31	11.89
KRH18263	Soybean	plastid	11.57	10.74
KRG93829	Soybean	nucleus, plastid	11.05	10.34
KRH35497	Soybean	nucleus	10.03	10.26
KRG91334	Soybean	nucleus	9.77	10.13

Protein Annotations

EntrezGene:102670246	MapMan:15.5.19	EMBL:ACUP02010335	EnsemblPlantsGene:GLYMA_17G079900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:K7MKI8	EnsemblPlants:KRH03150	ProteinID:KRH03150	ProteinID:KRH03150.1
ProteinID:KRH03151.1	ProteinID:KRH03152.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF24
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00023D4E2F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:6186387..6188530

Molecular Weight (calculated)

42549.1 Da

IEP (calculated)

8.943

GRAVY (calculated)

-0.737

Length

389 amino acids

Sequence
(BLAST)

001: MMIESSSKVH GANNQQEGDD NNIKIEKLSK APSTSSSSRS WSAFRNPRIV RVSRSLGGKD RHSKVCTIRG LRDRRIRLSV PTAIELYDLQ EKLGLNQPSK
101: VVDWLLETTK SDIDKLPPLQ FPHCFAHHHQ QTLLPGTSQF SLGGFYDAAA NGGNENHLMA TKSTRYWDID SHSLNNGKDL VESVSNSLKG KSWIKTNEQE
201: NHQDGGIGGS SSTHNNREEY SSAHYKLFPI GTTTNNSYLP GLLNNGMTHN SSNHHSEPSS LSLSHFGSHG LFPSSHNAHP SSCSGVPFSS CNFSAASSGP
301: QLLFCPPTSA TPASAFYSVE SDPRQSNNNV QIFSSSSQVM MPHPLIQSLH STNSTLNRRI PTSFSSKLLD SDNNNDRSQP NKGSSTTRS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.