Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g006980.1.1 | Tomato | nucleus | 94.75 | 96.27 |
| PGSC0003DMT400002153 | Potato | nucleus | 45.67 | 49.15 |
| PGSC0003DMT400008673 | Potato | nucleus | 13.91 | 33.76 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 19.16 | 30.67 |
| CDX81550 | Canola | nucleus | 23.62 | 26.63 |
| Bra038350.1-P | Field mustard | nucleus | 23.36 | 26.57 |
| CDY45852 | Canola | nucleus | 23.1 | 26.51 |
| CDY33597 | Canola | nucleus | 22.31 | 26.32 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 17.59 | 25.38 |
| AT1G68800.2 | Thale cress | nucleus | 23.88 | 25.14 |
| PGSC0003DMT400010380 | Potato | nucleus | 18.37 | 25.09 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 17.85 | 24.91 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 21.26 | 24.55 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 18.11 | 23.39 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 17.06 | 21.89 |
| PGSC0003DMT400014572 | Potato | nucleus | 21.26 | 21.43 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.42 | 21.02 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 19.42 | 20.9 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 23.88 | 20.78 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 19.16 | 20.74 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 19.42 | 20.73 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 11.02 | 19.27 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.16 | 19.21 |
| Os03t0706500-01 | Rice | nucleus | 19.16 | 18.81 |
| Zm00001d013467_P001 | Maize | nucleus | 17.59 | 18.66 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 17.59 | 18.31 |
| PGSC0003DMT400024329 | Potato | nucleus | 13.91 | 17.04 |
| PGSC0003DMT400032269 | Potato | nucleus | 17.06 | 16.25 |
| PGSC0003DMT400051253 | Potato | nucleus | 14.17 | 15.79 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 11.55 | 15.55 |
| PGSC0003DMT400039786 | Potato | nucleus | 15.22 | 13.78 |
| PGSC0003DMT400010453 | Potato | nucleus, plastid | 10.5 | 13.11 |
| PGSC0003DMT400059117 | Potato | nucleus | 11.02 | 12.57 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 10.76 | 11.92 |
| PGSC0003DMT400068478 | Potato | nucleus | 14.17 | 10.36 |
Protein Annotations
| EntrezGene:102586927 | MapMan:15.5.19 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M1ABX2 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400007467 | PGSC:PGSC0003DMG400007467 |
| EnsemblPlants:PGSC0003DMT400019324 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF22 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI000296C9E9 | RefSeq:XP_006366063.1 | SEG:seg | : | : |
Description
TCP protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007467]
Coordinates
chr4:-:688822..690224
Molecular Weight (calculated)
43635.2 Da
IEP (calculated)
8.817
GRAVY (calculated)
-1.167
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSSNNHDT FSYTSKTFLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI LPHKHQDHHV KEGNFTHLSS ETSKEEMSIE AKPSSKKRSL
101: STTPRRRTGK KDRHSKICTA QGVRDRRVRL SLHIARKFFD LQDMLGFDKA SKTIEWLFSK SNNAIKELSE NTPQKEYSDG NNKIVINSNN TSSSEGKSDS
201: FMSESEENSI NELGKDKEKM MQNNNPHKRE SREKARARAR ERTKEKMMIK GLEKCNPNNM FDQLGSSRSN SGFLDQDSNN NSYNTSVNQE KGSPHEANSQ
301: SLEHHFPIQN YLGGTSTNSS TIDVGNCFMS FHGNWEINYA PMKSSNYSTT FAGNPSSIYL AQQYQTLDQE KNLSCRHHRL E
101: STTPRRRTGK KDRHSKICTA QGVRDRRVRL SLHIARKFFD LQDMLGFDKA SKTIEWLFSK SNNAIKELSE NTPQKEYSDG NNKIVINSNN TSSSEGKSDS
201: FMSESEENSI NELGKDKEKM MQNNNPHKRE SREKARARAR ERTKEKMMIK GLEKCNPNNM FDQLGSSRSN SGFLDQDSNN NSYNTSVNQE KGSPHEANSQ
301: SLEHHFPIQN YLGGTSTNSS TIDVGNCFMS FHGNWEINYA PMKSSNYSTT FAGNPSSIYL AQQYQTLDQE KNLSCRHHRL E
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.