Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019324 | Potato | nucleus | 96.27 | 94.75 |
| Solyc05g009900.1.1 | Tomato | nucleus | 45.87 | 48.73 |
| Solyc03g045030.1.1 | Tomato | nucleus | 14.93 | 30.6 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 19.47 | 30.29 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 10.13 | 26.76 |
| CDX81550 | Canola | nucleus | 24.0 | 26.63 |
| Bra038350.1-P | Field mustard | nucleus | 23.73 | 26.57 |
| CDY45852 | Canola | nucleus | 23.47 | 26.51 |
| CDY33597 | Canola | nucleus | 22.67 | 26.32 |
| AT1G68800.2 | Thale cress | nucleus | 24.27 | 25.14 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 17.33 | 24.62 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 17.6 | 24.18 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 20.8 | 23.64 |
| Solyc03g119770.2.1 | Tomato | nucleus | 21.07 | 22.83 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 17.87 | 22.71 |
| Solyc10g018710.1.1 | Tomato | nucleus | 10.13 | 22.22 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 16.8 | 21.21 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.47 | 20.74 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 19.47 | 20.62 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 19.2 | 20.45 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 19.47 | 20.45 |
| Solyc06g069240.1.1 | Tomato | nucleus | 21.87 | 20.2 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 23.2 | 19.86 |
| Solyc07g053410.2.1 | Tomato | cytosol | 12.8 | 19.67 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.2 | 18.95 |
| Os03t0706500-01 | Rice | nucleus | 19.47 | 18.81 |
| Solyc05g012840.1.1 | Tomato | nucleus | 10.93 | 18.39 |
| Zm00001d013467_P001 | Maize | nucleus | 17.6 | 18.38 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 17.87 | 18.31 |
| Solyc11g045640.1.1 | Tomato | nucleus | 10.4 | 17.81 |
| Solyc05g032780.1.1 | Tomato | nucleus | 9.6 | 16.98 |
| Solyc07g062680.1.1 | Tomato | nucleus | 17.33 | 16.25 |
| Solyc08g048370.2.1 | Tomato | cytosol | 13.6 | 15.64 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 11.2 | 14.79 |
| Solyc12g014140.1.1 | Tomato | nucleus | 14.93 | 14.21 |
| Solyc06g069460.1.1 | Tomato | plastid | 10.4 | 14.03 |
| Solyc08g048390.1.1 | Tomato | nucleus | 14.4 | 13.95 |
| Solyc02g077250.2.1 | Tomato | nucleus | 11.73 | 12.43 |
| Solyc03g115010.1.1 | Tomato | plastid | 10.67 | 11.73 |
| Solyc10g008780.1.1 | Tomato | nucleus | 14.13 | 9.11 |
Protein Annotations
| MapMan:15.5.19 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 |
| InterPro:IPR017888 | UniProt:K4BNK5 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF22 | EnsemblPlantsGene:Solyc04g006980.1 | EnsemblPlants:Solyc04g006980.1.1 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00027665F4 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:687298..688425
Molecular Weight (calculated)
42770.2 Da
IEP (calculated)
8.708
GRAVY (calculated)
-1.131
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSSNNHDT FSYTSKTYLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI LPQDHHVKEG NLTHLSSETS KEEMSIEAKP SSKKRSLSTT
101: PRKRTGKKDR HSKICTAQGV RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI VINSNNSSSY EGKSDSFMSE
201: CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH
301: FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT LDQEKNLSSK HHRLE
101: PRKRTGKKDR HSKICTAQGV RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI VINSNNSSSY EGKSDSFMSE
201: CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH
301: FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT LDQEKNLSSK HHRLE
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Arabidopsis Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.