Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038350.1-P | Field mustard | nucleus | 67.96 | 73.43 |
| CDX81550 | Canola | nucleus | 68.51 | 73.37 |
| CDY45852 | Canola | nucleus | 67.13 | 73.19 |
| CDY33597 | Canola | nucleus | 61.33 | 68.73 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 32.87 | 27.17 |
| Solyc04g006980.1.1 | Tomato | nucleus | 25.14 | 24.27 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 17.68 | 24.24 |
| PGSC0003DMT400019324 | Potato | nucleus | 25.14 | 23.88 |
| Solyc05g009900.1.1 | Tomato | nucleus | 22.93 | 23.51 |
| PGSC0003DMT400002153 | Potato | nucleus | 22.65 | 23.16 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 17.4 | 23.08 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 17.96 | 22.03 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 17.4 | 21.21 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 19.06 | 20.91 |
| AT1G67260.1 | Thale cress | nucleus | 20.44 | 20.61 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 19.61 | 19.89 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 19.34 | 19.77 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.06 | 19.6 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 19.06 | 19.6 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.61 | 18.68 |
| Zm00001d013467_P001 | Maize | nucleus | 18.23 | 18.38 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 18.51 | 18.31 |
| AT3G18550.3 | Thale cress | nucleus | 21.27 | 17.74 |
| Os03t0706500-01 | Rice | nucleus | 18.23 | 17.01 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 10.77 | 16.12 |
| AT1G30210.1 | Thale cress | nucleus | 13.81 | 15.43 |
| AT4G18390.1 | Thale cress | nucleus | 14.64 | 14.52 |
| AT5G60970.1 | Thale cress | nucleus | 12.43 | 12.5 |
| AT2G31070.1 | Thale cress | nucleus | 11.6 | 11.63 |
| AT3G15030.1 | Thale cress | nucleus | 13.26 | 11.43 |
| AT3G02150.2 | Thale cress | nucleus | 11.05 | 11.27 |
| AT1G53230.1 | Thale cress | nucleus | 11.33 | 10.49 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:843212 | UniProt:A0A1P8AWJ0 | ProteinID:ANM61024.1 | ArrayExpress:AT1G68800 | EnsemblPlantsGene:AT1G68800 |
| RefSeq:AT1G68800 | TAIR:AT1G68800 | RefSeq:AT1G68800-TAIR-G | EnsemblPlants:AT1G68800.2 | Symbol:BRC2 | InterPro:CYC/TB1_R_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | RefSeq:NP_001323269.1 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF22 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI0001E24551 | SEG:seg | : | : | : |
Description
BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
Coordinates
chr1:-:25845892..25850131
Molecular Weight (calculated)
41868.3 Da
IEP (calculated)
8.219
GRAVY (calculated)
-0.801
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.