Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68596 | Canola | cytosol, nucleus | 80.71 | 87.82 |
| Bra027284.1-P | Field mustard | nucleus | 81.43 | 84.24 |
| CDX82453 | Canola | nucleus | 80.24 | 83.21 |
| CDX75802 | Canola | nucleus | 80.0 | 83.17 |
| Bra021586.1-P | Field mustard | nucleus | 68.81 | 82.57 |
| Bra001579.1-P | Field mustard | nucleus | 80.0 | 82.56 |
| CDY20097 | Canola | nucleus | 69.52 | 81.79 |
| AT1G53230.1 | Thale cress | nucleus | 63.81 | 68.54 |
| Solyc12g014140.1.1 | Tomato | nucleus | 44.29 | 47.21 |
| PGSC0003DMT400039786 | Potato | nucleus | 46.43 | 46.32 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 31.43 | 43.0 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 44.29 | 41.33 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 44.29 | 40.97 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 44.05 | 40.48 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 39.52 | 39.06 |
| AT2G31070.1 | Thale cress | nucleus | 32.14 | 37.4 |
| KXG33398 | Sorghum | nucleus | 34.29 | 31.93 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 44.52 | 31.69 |
| Zm00001d039371_P001 | Maize | mitochondrion | 42.62 | 31.68 |
| Os01t0213800-01 | Rice | mitochondrion | 43.57 | 31.61 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 33.33 | 31.39 |
| Zm00001d043423_P001 | Maize | nucleus | 32.38 | 31.34 |
| OQU86111 | Sorghum | plastid | 42.14 | 28.23 |
| AT4G18390.1 | Thale cress | nucleus | 21.43 | 24.66 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 12.62 | 24.65 |
| AT5G08070.1 | Thale cress | nucleus, plastid | 14.05 | 24.38 |
| AT1G30210.1 | Thale cress | nucleus | 18.33 | 23.77 |
| AT3G02150.2 | Thale cress | nucleus | 17.86 | 21.13 |
| Zm00001d012725_P002 | Maize | plastid | 32.62 | 19.63 |
| AT5G60970.1 | Thale cress | nucleus | 14.76 | 17.22 |
| AT1G67260.1 | Thale cress | nucleus | 13.57 | 15.88 |
| AT1G68800.2 | Thale cress | nucleus | 11.43 | 13.26 |
| AT3G18550.3 | Thale cress | nucleus | 9.76 | 9.45 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:820732 | UniProt:A0A178VD44 | ProteinID:AEE75606.1 | ProteinID:AEE75607.1 | ProteinID:AEE75608.1 |
| EMBL:AK316704 | ProteinID:ANM65437.1 | ArrayExpress:AT3G15030 | EnsemblPlantsGene:AT3G15030 | RefSeq:AT3G15030 | TAIR:AT3G15030 |
| RefSeq:AT3G15030-TAIR-G | EnsemblPlants:AT3G15030.1 | TAIR:AT3G15030.1 | EMBL:AY094444 | EMBL:AY149957 | Unigene:At.23764 |
| Unigene:At.75241 | UniProt:B9DFB4 | ProteinID:BAA97066.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045962 | GO:GO:0048366 |
| GO:GO:0048826 | InterPro:IPR017887 | RefSeq:NP_001189896.1 | RefSeq:NP_001319557.1 | RefSeq:NP_188121.1 | RefSeq:NP_850589.1 |
| ProteinID:OAP03295.1 | PFAM:PF03634 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0025022 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF13 | UniProt:Q8LPR5 | Symbol:TCP4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000AC64B |
| SEG:seg | : | : | : | : | : |
Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
Coordinates
chr3:+:5061681..5064152
Molecular Weight (calculated)
45965.9 Da
IEP (calculated)
7.294
GRAVY (calculated)
-0.818
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.