Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G003440.12 | |
| HORVU4Hr1G010080.2 | |
| HORVU4Hr1G037480.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31070.1 | HORVU4Hr1G003440.12 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | HORVU4Hr1G010080.2 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | HORVU4Hr1G037480.5 | AT2G22840.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G072670.2 | Barley | nucleus | 64.65 | 59.4 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 55.35 | 26.68 |
| KXG33398 | Sorghum | nucleus | 53.49 | 25.5 |
| Zm00001d043423_P001 | Maize | nucleus | 50.23 | 24.88 |
| Zm00001d012725_P002 | Maize | plastid | 51.16 | 15.76 |
| CDX97627 | Canola | mitochondrion | 17.67 | 13.87 |
| VIT_19s0014g01680.t01 | Wine grape | nucleus | 25.12 | 13.57 |
| PGSC0003DMT400032269 | Potato | nucleus | 25.12 | 13.5 |
| Solyc07g062680.1.1 | Tomato | nucleus | 24.65 | 13.25 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 18.6 | 13.03 |
| AT3G15030.1 | Thale cress | nucleus | 24.65 | 12.62 |
| Bra027284.1-P | Field mustard | nucleus | 23.72 | 12.56 |
| KRH27317 | Soybean | nucleus | 21.86 | 12.47 |
| Bra001579.1-P | Field mustard | nucleus | 22.79 | 12.04 |
| KRH26201 | Soybean | nucleus | 21.86 | 11.84 |
| KRH21998 | Soybean | nucleus | 20.93 | 11.45 |
| PGSC0003DMT400039786 | Potato | nucleus | 21.86 | 11.16 |
| KRH22307 | Soybean | nucleus | 17.67 | 11.05 |
| KRH55125 | Soybean | nucleus | 20.0 | 11.0 |
| KRH27017 | Soybean | nucleus | 17.21 | 10.79 |
| AT1G53230.1 | Thale cress | nucleus | 19.07 | 10.49 |
| Bra030952.1-P | Field mustard | nucleus | 16.74 | 10.43 |
| Solyc12g014140.1.1 | Tomato | nucleus | 19.07 | 10.41 |
| GSMUA_Achr7P13980_001 | Banana | nucleus | 17.21 | 10.05 |
| Bra021586.1-P | Field mustard | nucleus | 16.28 | 10.0 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 27.44 | 10.0 |
| Solyc05g012840.1.1 | Tomato | nucleus | 10.23 | 9.87 |
| PGSC0003DMT400024329 | Potato | nucleus | 13.95 | 9.65 |
| Solyc07g053410.2.1 | Tomato | cytosol | 10.23 | 9.02 |
| Bra018280.1-P | Field mustard | nucleus | 14.42 | 8.88 |
| GSMUA_Achr3P31370_001 | Banana | nucleus | 10.7 | 8.81 |
| Solyc10g018710.1.1 | Tomato | nucleus | 6.51 | 8.19 |
| AT2G31070.1 | Thale cress | nucleus | 13.49 | 8.03 |
| KRH25697 | Soybean | nucleus | 10.7 | 7.9 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 14.42 | 7.75 |
| Solyc11g045640.1.1 | Tomato | nucleus | 7.44 | 7.31 |
| KRH55819 | Soybean | nucleus | 11.16 | 7.21 |
| VIT_10s0003g00870.t01 | Wine grape | nucleus | 12.56 | 7.07 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 13.02 | 6.8 |
| PGSC0003DMT400059117 | Potato | nucleus | 10.23 | 6.59 |
| Solyc02g077250.2.1 | Tomato | nucleus | 10.23 | 6.21 |
| Solyc05g032780.1.1 | Tomato | nucleus | 6.05 | 6.13 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 7.44 | 5.42 |
| PGSC0003DMT400068478 | Potato | nucleus | 12.56 | 5.18 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 6.51 | 4.79 |
| Solyc10g008780.1.1 | Tomato | nucleus | 12.09 | 4.47 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 5.12 | 3.96 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 4.65 | 3.66 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 4.65 | 3.37 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 5.58 | 3.36 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G006890.2 | EnsemblPlantsGene:HORVU0Hr1G006890 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF16 | SEG:seg | UniParc:UPI000B481256 |
| UniProt:A0A287DX61 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:40134007..40134741
Molecular Weight (calculated)
19071.6 Da
IEP (calculated)
4.547
GRAVY (calculated)
-0.553
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: IRNAKAAIEE LPDRPEEAPP TAEPEPVAAE QMSEHVTSTS SYGFGNPGGT AMTNSFLQHP LGADQVSDNV KSLFPSSSTA TASGHDEYRG SPPDLLSRTT
101: SSQPQELCLT LQSNQHNIFT HVSPNHHGII SGAGVPGWPD HGQRMPSSTW HASDNNVGEG RGAGGNGDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXIVLNEDSF TCVDT
101: SSQPQELCLT LQSNQHNIFT HVSPNHHGII SGAGVPGWPD HGQRMPSSTW HASDNNVGEG RGAGGNGDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXIVLNEDSF TCVDT
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.