Factsheet for HORVU2Hr1G060120.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G062160.1
HORVU3Hr1G033880.2
HORVU7Hr1G031190.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	HORVU3Hr1G033880.2	AT4G14700.1	18818695
AT1G30210.1	HORVU7Hr1G031190.2	AT4G14700.1	18818695
AT1G30210.1	HORVU1Hr1G062160.1	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G252100.1	Wheat	nucleus	92.23	91.35
TraesCS2B01G265800.1	Wheat	nucleus	91.99	89.39
TraesCS2A01G251100.1	Wheat	plastid, vacuole	92.96	69.89
Os03t0785800-01	Rice	nucleus	43.45	50.14
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	45.63	49.34
KXG37409	Sorghum	cytosol	45.87	48.59
GSMUA_Achr7P01160_001	Banana	nucleus	44.42	47.91
Zm00001d034353_P001	Maize	cytosol	44.66	47.67
GSMUA_Achr2P12990_001	Banana	nucleus	43.69	47.62
GSMUA_Achr4P22960_001	Banana	nucleus	43.69	47.12
HORVU5Hr1G103400.1	Barley	nucleus	45.15	46.5
GSMUA_Achr5P02530_001	Banana	nucleus	42.96	46.34
GSMUA_Achr4P31520_001	Banana	nucleus	42.48	46.05
VIT_10s0003g03910.t01	Wine grape	nucleus	47.82	44.37
PGSC0003DMT400051253	Potato	nucleus	36.41	43.86
AT1G30210.1	Thale cress	nucleus	33.74	42.9
AT4G18390.1	Thale cress	nucleus	36.65	41.37
Solyc08g048390.1.1	Tomato	nucleus	37.14	39.53
KRH58674	Soybean	nucleus	44.17	38.08
Solyc08g048370.2.1	Tomato	cytosol	30.1	38.04
KRH42567	Soybean	nucleus	42.96	37.82
HORVU5Hr1G008340.2	Barley	nucleus	26.94	37.63
KRH11155	Soybean	nucleus	45.15	36.4
KRH21093	Soybean	nucleus	45.39	35.15
Bra013304.1-P	Field mustard	nucleus, plastid	19.66	33.89
CDX78849	Canola	nucleus, plastid	19.66	33.89
HORVU1Hr1G077080.1	Barley	nucleus	20.63	29.11
HORVU3Hr1G073830.1	Barley	nucleus	18.93	28.06
HORVU5Hr1G000490.1	Barley	nucleus	13.84	19.19
HORVU4Hr1G007040.1	Barley	nucleus	14.56	16.81
HORVU5Hr1G061270.1	Barley	nucleus	10.92	16.48
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	23.3	16.27
HORVU0Hr1G006890.2	Barley	cytosol	6.8	13.02
HORVU3Hr1G072670.2	Barley	nucleus	7.04	12.39

Protein Annotations

MapMan:15.5.19	EMBL:AK370348	InterPro:CYC/TB1_R_domain	UniProt:F2E2H7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G060120	EnsemblPlants:HORVU2Hr1G060120.1	InterPro:IPR017887	InterPro:IPR017888	PFAM:PF03634
PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF63	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000200800A	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E2H7]

Coordinates

chrchr2H:-:399934682..399942703

Molecular Weight (calculated)

44235.4 Da

IEP (calculated)

9.813

GRAVY (calculated)

-0.607

Length

412 amino acids

Sequence
(BLAST)

001: MDLSVAAAVE LGKRGRTEDQ DQDQGHGDAK RLALVPWPPH QQHPSSRIYR VSRGSGGKDR HSKVYTAKGI RDRRVRLSVA TAIQFYDLQD RLGYDQPSKA
101: VEWLIKAAAA AIDKLPELEA AAFPNHPASA NKQSSALQPE AHGSQPQQQQ LTRSACSSTS ETSKGSVLSL SRSDSRVKAR ERARDRSASV KDKEAGDDSA
201: TRAPSAQAAS FTELLTGLAA ATPAAAQHKH HNSWHQMTAS ATADYLGFAQ PRKSGHGMLH TFASPAPHLG NIAPVAMAPG QHFSLSAGGE PQTEMPHFSF
301: SQDHYMPVHA AATSAPSVDY NLNFSMSSGL VGVNNTRGTL QSNSQPHLSG HHQQQQLQRL STPLDAPHIP FLFSPAVAVA SPTTAESHFG AAAALQLWEG
401: FRHSDMKEKG KN

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.