Factsheet for VIT_10s0003g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01680.t01	Wine grape	nucleus	34.55	33.17
Bra030952.1-P	Field mustard	nucleus	29.06	32.17
CDY02519	Canola	nucleus	28.53	31.69
VIT_12s0028g02520.t01	Wine grape	nucleus	24.61	30.62
AT1G53230.1	Thale cress	nucleus	30.37	29.67
Zm00001d008919_P001	Maize	nucleus, plastid	28.53	25.65
TraesCS3B01G164500.1	Wheat	nucleus	28.27	24.0
TraesCS3A01G140100.1	Wheat	nucleus	28.53	23.85
TraesCS3D01G146900.1	Wheat	nucleus	28.27	23.79
Os01t0755500-01	Rice	cytosol, mitochondrion	24.87	21.3
Zm00001d043423_P001	Maize	nucleus	23.82	20.97
KXG33398	Sorghum	nucleus	24.35	20.62
Os01t0213800-01	Rice	mitochondrion	30.37	20.03
Zm00001d039371_P001	Maize	mitochondrion	29.32	19.82
VIT_14s0068g00330.t01	Wine grape	nucleus	17.8	19.48
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	28.8	18.64
OQU86111	Sorghum	plastid	29.32	17.86
VIT_10s0003g03910.t01	Wine grape	nucleus	18.32	15.77
VIT_14s0083g00150.t01	Wine grape	nucleus	13.09	15.15
VIT_17s0000g04180.t01	Wine grape	nucleus	13.61	14.21
Zm00001d012725_P002	Maize	plastid	24.87	13.61
HORVU0Hr1G006890.2	Barley	cytosol	7.07	12.56
VIT_01s0011g02920.t01	Wine grape	nucleus	13.35	11.64

Protein Annotations

MapMan:15.5.19	ProteinID:CBI30654	ProteinID:CBI30654.3	UniProt:D7TJI2	EMBL:FN595992	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001BE3791	ArrayExpress:VIT_10s0003g00870	EnsemblPlantsGene:VIT_10s0003g00870
EnsemblPlants:VIT_10s0003g00870.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:2112286..2113434

Molecular Weight (calculated)

42400.7 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.519

Length

382 amino acids

Sequence
(BLAST)

001: MLHEKTKDIW KSKRSYLMSS SASLVSEQLM IEGTRISLEH ASSELRLKKG AERVQVRRGH IARSIGKKDR HSKVCTSKGP RDRRVRLSAN TAIQFYDVQD
101: RLGYDRPSKA VDWLMEKAKT AIDALAELPT QCPLSTSVVA SAQQREQNLN HLQHPHLRVE QLETILDLNQ QHLNENPIYS SGFFHIPVST AFSAVHFQNS
201: PAYPNLGAIS HTQYPYLSIQ SFQDPTPGRH HSTTISSADQ AIYSASSPLV FDAASTHWPH SDPPEMSQPQ KMIDWNSDTG NGIQGLVFDS LPLPLQEPVL
301: SQNQLFSERE PLQSTDSALI SDWMNPPIST ANVQHITMEA NQSSGFALAS NGISRIGISA HIQGEDMEQS TVCNSQSSAT HC

Best Arabidopsis Sequence Match ( AT1G53230.2 )
(BLAST)

001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H

Arabidopsis Description

TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.