Factsheet for PGSC0003DMT400014572

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119770.2.1	Tomato	nucleus	75.4	82.37
PGSC0003DMT400010380	Potato	nucleus	27.25	36.92
PGSC0003DMT400008673	Potato	nucleus	12.43	29.94
VIT_17s0000g04180.t01	Wine grape	nucleus	28.84	29.78
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	18.25	28.99
CDY18525	Canola	nucleus	18.78	25.09
KRH56692	Soybean	nucleus	24.87	25.0
Bra037579.1-P	Field mustard	nucleus	18.78	24.91
KRH03810	Soybean	nucleus	24.87	24.74
CDX95517	Canola	nucleus	18.52	24.73
KRH63057	Soybean	nucleus	24.6	24.16
KRH54810	Soybean	nucleus	25.13	23.99
TraesCS5D01G002300.1	Wheat	nucleus	16.67	23.86
TraesCS5A01G001900.1	Wheat	nucleus	17.2	23.81
TraesCS5B01G002300.1	Wheat	nucleus	17.46	22.37
HORVU5Hr1G000490.1	Barley	nucleus	17.2	21.89
PGSC0003DMT400019324	Potato	nucleus	21.43	21.26
TraesCS4D01G040100.1	Wheat	nucleus	19.05	20.45
TraesCS4B01G042700.1	Wheat	nucleus	19.05	20.34
TraesCS4A01G271300.1	Wheat	nucleus	18.78	20.17
HORVU4Hr1G007040.1	Barley	nucleus	18.52	19.61
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	18.52	19.13
CDY62798	Canola	nucleus	20.63	18.98
Os03t0706500-01	Rice	nucleus	19.31	18.81
Zm00001d013467_P001	Maize	nucleus	17.72	18.66
AT3G18550.3	Thale cress	nucleus	21.16	18.43
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	18.52	18.42
CDX82339	Canola	nucleus	20.63	18.4
PGSC0003DMT400002153	Potato	nucleus	17.2	18.36
Bra001710.1-P	Field mustard	nucleus	20.63	18.35
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	10.58	18.35
CDY52898	Canola	nucleus	20.37	18.12
PGSC0003DMT400051253	Potato	nucleus	13.76	15.2
PGSC0003DMT400003453	Potato	nucleus, plastid	10.85	14.49
PGSC0003DMT400024329	Potato	nucleus	11.9	14.47
PGSC0003DMT400032269	Potato	nucleus	14.81	14.0
PGSC0003DMT400039786	Potato	nucleus	14.02	12.59
PGSC0003DMT400063327	Potato	nucleus, plastid	11.38	12.5
PGSC0003DMT400010453	Potato	nucleus, plastid	10.05	12.46
PGSC0003DMT400059117	Potato	nucleus	10.58	11.98
PGSC0003DMT400068478	Potato	nucleus	12.43	9.02

Protein Annotations

EntrezGene:102578271	MapMan:15.5.19	ProteinID:AEF98449	ProteinID:AEF98449.1	ProteinID:AEF98456	ProteinID:AEF98456.1
InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:HM597227	EMBL:HM921052
InterPro:IPR017887	InterPro:IPR017888	UniProt:M1A4H5	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400005705	PGSC:PGSC0003DMG400005705
EnsemblPlants:PGSC0003DMT400014572	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF22	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0002969F2E	SEG:seg	:	:	:

Description

TCP transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005705]

Coordinates

chr3:+:59170851..59173468

Molecular Weight (calculated)

42884.7 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.595

Length

378 amino acids

Sequence
(BLAST)

001: MYPSSPNISS SSSFFHINIP SPSMQYEPEF IQYFHDFQFI QPAAYDQNNL DTNITAEEGD HKMEEDELIM KSCKNKKDES TSTTTTIRRK NNKRTTSGTG
101: VGPSKKDRHS KINTAHGPRD RRMRLSLEIA RKFFNLQDLL GFDKASKTVE WLLTKSKSAV NDLVQKISKG KCSASTNPNI GVVSSPSESC EVISGVIDES
201: AATNNTHKQQ KKKKSIRRAI FHPVVAKESR TEARARARER TKIKKSLNNN NGDQSMAPDE DLTRSLGSWS TTFEDHQSGI QAYNNTNNIM NAVDNFNLVD
301: TSNWSPFMFN YHQINTEISQ EVCINLIRLL LLLLLIRSPN IYFYFYSSVA ASIDKLPVSW QVMGSLIRAR KFYLSLLI

Best Arabidopsis Sequence Match ( AT3G18550.3 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEVPY LYLRVTFIIF MSFFPMVLSK AIHS

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.