Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18493 | Sorghum | cytosol | 91.95 | 91.95 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 79.53 | 86.18 |
| Os05t0513100-01 | Rice | nucleus | 66.11 | 67.01 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 58.39 | 59.59 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 58.05 | 56.54 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 57.38 | 55.52 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 57.72 | 54.95 |
| Zm00001d043368_P001 | Maize | cytosol | 48.99 | 51.59 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 23.49 | 49.3 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 27.18 | 37.16 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 33.56 | 35.34 |
| Solyc02g089020.1.1 | Tomato | nucleus, plastid | 33.22 | 34.86 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 36.58 | 31.23 |
| KRH45058 | Soybean | nucleus | 36.91 | 30.99 |
| KRH01308 | Soybean | cytosol | 38.26 | 29.69 |
| Bra039158.1-P | Field mustard | nucleus | 29.53 | 28.48 |
| CDX91977 | Canola | nucleus | 30.54 | 28.44 |
| CDX74272 | Canola | nucleus | 30.54 | 28.44 |
| KRG93654 | Soybean | nucleus | 35.57 | 28.34 |
| AT3G02150.2 | Thale cress | nucleus | 30.54 | 25.63 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 29.87 | 22.42 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 26.17 | 20.47 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 29.19 | 20.28 |
| Zm00001d032217_P001 | Maize | cytosol | 15.77 | 19.58 |
| Zm00001d022256_P001 | Maize | nucleus | 20.81 | 19.2 |
| Zm00001d034353_P001 | Maize | cytosol | 24.83 | 19.17 |
| Zm00001d007868_P001 | Maize | nucleus | 28.19 | 19.09 |
| Zm00001d018806_P001 | Maize | nucleus | 27.18 | 18.54 |
| Zm00001d050389_P001 | Maize | nucleus | 16.11 | 17.52 |
| Bra001032.1-P | Field mustard | nucleus | 30.2 | 16.73 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 21.14 | 14.82 |
| Zm00001d020433_P001 | Maize | nucleus | 12.42 | 14.62 |
| Zm00001d005737_P001 | Maize | cytosol | 13.42 | 14.49 |
| Zm00001d043423_P001 | Maize | nucleus | 20.81 | 14.29 |
| Zm00001d039371_P001 | Maize | mitochondrion | 22.48 | 11.86 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 12.42 | 10.11 |
| Zm00001d012725_P002 | Maize | plastid | 21.14 | 9.03 |
| Zm00001d013467_P001 | Maize | nucleus | 10.07 | 8.36 |
Protein Annotations
| MapMan:15.5.19 | ProteinID:AIB05534.1 | ProteinID:AQK87546.1 | EMBL:BT060684 | EMBL:BT067152 | UniProt:C0HEC8 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF67 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0001948A60 | EnsemblPlantsGene:Zm00001d038683 |
| EnsemblPlants:Zm00001d038683_P001 | EnsemblPlants:Zm00001d038683_T001 | SEG:seg | : | : | : |
Description
TCP-transcription factor 23Transcription factor TCP5
Coordinates
chr6:+:162529258..162530154
Molecular Weight (calculated)
30904.5 Da
IEP (calculated)
8.307
GRAVY (calculated)
-0.250
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGNLNNEE LGGGGCTKAE GPGAAGGAGA VVAKSPVLSS SRHWPPSTES RIVRVSRVFG GKDRHSKVRT VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ
101: PSKVVDWLLD AAQDEIDKLP PLQFPPQGQD LVAHLPPSMV APFANVAADR AAAAAAAANA SAAMAEGGKR HCHGGIKGLM GMGLNNSIGL ANATMPLAHG
201: LYYTPGESWT NGGNAAVHDH QVSHGGTSPQ TVAHHSPFSS LLSLAAPGPQ LVFYSPEGGG FAMKEATDHQ FAVDSLDHSQ GQLSLSSARS FLHPGNQG
101: PSKVVDWLLD AAQDEIDKLP PLQFPPQGQD LVAHLPPSMV APFANVAADR AAAAAAAANA SAAMAEGGKR HCHGGIKGLM GMGLNNSIGL ANATMPLAHG
201: LYYTPGESWT NGGNAAVHDH QVSHGGTSPQ TVAHHSPFSS LLSLAAPGPQ LVFYSPEGGG FAMKEATDHQ FAVDSLDHSQ GQLSLSSARS FLHPGNQG
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.