Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012600.1-P | Field mustard | nucleus | 96.07 | 96.07 |
| CDY60877 | Canola | nucleus | 82.2 | 87.71 |
| CDX78849 | Canola | nucleus, plastid | 54.19 | 86.61 |
| AT4G18390.1 | Thale cress | nucleus | 80.89 | 84.66 |
| CDY01537 | Canola | nucleus | 59.95 | 74.59 |
| CDX99891 | Canola | nucleus | 37.96 | 45.74 |
| CDY26285 | Canola | nucleus | 37.7 | 45.28 |
| CDY59229 | Canola | nucleus | 34.03 | 41.53 |
| CDX90234 | Canola | nucleus | 32.72 | 40.58 |
| PGSC0003DMT400051253 | Potato | nucleus | 36.13 | 40.35 |
| Solyc08g048390.1.1 | Tomato | nucleus | 38.74 | 38.24 |
| Solyc08g048370.2.1 | Tomato | cytosol | 30.89 | 36.2 |
| CDX74272 | Canola | nucleus | 18.59 | 22.19 |
| CDX91977 | Canola | nucleus | 18.59 | 22.19 |
| CDY02519 | Canola | nucleus | 19.9 | 22.09 |
| CDY10772 | Canola | nucleus | 19.9 | 21.97 |
| CDY10771 | Canola | nucleus | 19.9 | 21.9 |
| CDY24724 | Canola | nucleus | 19.9 | 21.84 |
| CDX81083 | Canola | nucleus, plastid | 13.35 | 20.9 |
| CDX75802 | Canola | nucleus | 21.99 | 20.79 |
| CDX82453 | Canola | nucleus | 21.99 | 20.74 |
| CDX78321 | Canola | nucleus, plastid | 13.35 | 20.73 |
| CDY20097 | Canola | nucleus | 19.11 | 20.45 |
| CDY68596 | Canola | cytosol, nucleus | 20.42 | 20.21 |
| CDY47005 | Canola | nucleus, plastid | 14.92 | 18.94 |
| CDY68618 | Canola | nucleus, plastid | 14.92 | 18.87 |
| CDY01793 | Canola | nucleus | 17.02 | 18.41 |
| CDY12633 | Canola | nucleus | 14.66 | 17.39 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 18.06 | 17.38 |
| CDX96104 | Canola | nucleus | 15.97 | 17.38 |
| CDY02180 | Canola | nucleus | 16.49 | 17.21 |
| CDY46042 | Canola | nucleus | 15.45 | 17.05 |
| CDY07432 | Canola | nucleus | 15.71 | 17.05 |
| CDY58696 | Canola | nucleus | 16.23 | 17.03 |
| CDY28898 | Canola | nucleus | 15.45 | 16.67 |
| CDY18525 | Canola | nucleus | 12.04 | 16.25 |
| CDX95517 | Canola | nucleus | 12.04 | 16.25 |
| CDY33597 | Canola | nucleus | 13.61 | 16.1 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 18.06 | 16.08 |
| CDX81550 | Canola | nucleus | 14.14 | 15.98 |
| CDY45852 | Canola | nucleus | 13.87 | 15.96 |
| CDY52898 | Canola | nucleus | 13.35 | 12.0 |
| CDY62798 | Canola | nucleus | 12.57 | 11.68 |
| CDX82339 | Canola | nucleus | 12.83 | 11.56 |
| CDX97627 | Canola | mitochondrion | 7.85 | 10.95 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078J1D4 | EnsemblPlants:CDY55633 | ProteinID:CDY55633 | ProteinID:CDY55633.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00017146001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EEFDB3 | SEG:seg |
Description
BnaA03g58260DBnaA03g58260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1D4]
Coordinates
chrLK033417:-:22797..25885
Molecular Weight (calculated)
41981.8 Da
IEP (calculated)
7.466
GRAVY (calculated)
-0.929
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIEKLRNES IGDDEMIGDL MKNNNGDVVD NTNNNRLSRW HHNSSRIIRV SRASGGKDRH SKVWTSKGPR DRRVRLSVST ALQFYDLQDR LGYDQPSKAV
101: EWLIKAAEDS ISELPSLNNT NFPMNDDDNQ IPTLTGASPT AAAAAANSLS KSACSSNSDT SKNSSGLSLS RERARERTAK ETKERDGNNN HHTTSFTDLL
201: NSGSDPVNTN RQWMAPSSSP APMEYFSSGL ILGSGQTHFP IQTNSHPFSS ISDHHHQHHP HQEFSFVPDH LISPAGSNGG GAFNLDFNMS TTSVASTGFS
301: GFNRGTLQSN STNHHHHHQS FLANLQRFPS SEGGGGPQFL FGTGALPAEN QHPHHNNNNN HQFQLYYENG CRNSDQKGKG KN
101: EWLIKAAEDS ISELPSLNNT NFPMNDDDNQ IPTLTGASPT AAAAAANSLS KSACSSNSDT SKNSSGLSLS RERARERTAK ETKERDGNNN HHTTSFTDLL
201: NSGSDPVNTN RQWMAPSSSP APMEYFSSGL ILGSGQTHFP IQTNSHPFSS ISDHHHQHHP HQEFSFVPDH LISPAGSNGG GAFNLDFNMS TTSVASTGFS
301: GFNRGTLQSN STNHHHHHQS FLANLQRFPS SEGGGGPQFL FGTGALPAEN QHPHHNNNNN HQFQLYYENG CRNSDQKGKG KN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.