CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX84793
CDY10780
CDY15409
CDY16196
CDY16697
CDY23948
CDY24744
CDY45004
CDY46437
CDY49642
CDY50732
CDY62377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	CDY16196	AT1G26830.1	15659098
AT5G13060.1	CDY45004	AT1G26830.1	15659098
AT5G13060.1	CDY46437	AT1G26830.1	15659098
AT5G13060.1	CDY50732	AT1G26830.1	15659098
AT5G13060.1	CDX84793	AT2G31270.1	18818695
AT5G13060.1	CDY10780	AT2G31270.1	18818695
AT5G13060.1	CDY15409	AT2G31270.1	18818695
AT5G13060.1	CDY23948	AT2G31270.1	18818695
AT5G13060.1	CDY24744	AT2G31270.1	18818695
AT5G13060.1	CDY16697	AT4G14700.1	18818695
AT5G13060.1	CDY62377	AT4G14700.1	18818695
AT5G13060.1	CDX69432	AT5G16690.1	18818695
AT5G13060.1	CDY49642	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85673	Canola	plastid	95.61	95.09
CDX69674	Canola	cytosol	86.01	88.68
CDX97221	Canola	cytosol, mitochondrion	84.77	87.41
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	80.52	79.65
CDY51336	Canola	mitochondrion	18.52	57.69
Solyc09g065210.2.1	Tomato	cytosol	52.95	54.52
Solyc06g084250.2.1	Tomato	cytosol	52.67	54.47
VIT_07s0104g00020.t01	Wine grape	cytosol	51.71	53.48
CDX92539	Canola	cytosol	50.89	52.92
CDX88895	Canola	cytosol, nucleus, plastid	51.71	52.73
HORVU1Hr1G062160.1	Barley	cytosol	50.34	50.97
GSMUA_Achr9P17600_001	Banana	cytosol	51.3	50.27
EES19490	Sorghum	nucleus	51.3	50.2
TraesCS1A01G249400.1	Wheat	cytosol	50.21	50.0
KRG95533	Soybean	cytosol	48.83	49.93
KRH67208	Soybean	cytosol	47.74	49.36
TraesCS1D01G248900.1	Wheat	cytosol	50.21	49.33
TraesCS1B01G260100.1	Wheat	cytosol	50.21	49.33
GSMUA_Achr10P...	Banana	cytosol	11.66	49.13
CDY15719	Canola	plastid	9.33	48.92
Zm00001d038134_P001	Maize	cytosol	51.3	47.04
GSMUA_Achr2P00100_001	Banana	cytosol	11.93	46.77
Zm00001d010341_P002	Maize	cytosol	48.42	46.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum	24.42	45.64
Os05t0398100-01	Rice	cytosol	13.99	45.54
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	15.09	44.35
CDX70872	Canola	cytosol	22.09	41.6
GSMUA_Achr10P...	Banana	cytosol	11.39	41.5
CDX70871	Canola	cytosol	15.09	41.2
GSMUA_Achr2P00090_001	Banana	cytosol	10.56	41.18
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	10.84	39.11
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	20.3	34.1
CDY13990	Canola	nucleus	50.62	29.17

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	EnsemblPlants:CDX91149	ProteinID:CDX91149	ProteinID:CDX91149.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151942001	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514
PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf
SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0004EE7822	SEG:seg

Description

BnaC02g04480D

Coordinates

chrLK031865:-:1024369..1028393

Molecular Weight (calculated)

80634.5 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.075

Length

729 amino acids

Sequence
(BLAST)

001: MKISKSLKIH RRISSSSAIS NHPPMEENHH KRQRTARVVA GRTSKRKLGR ETYAVSIITQ ITETEEEETD LAVAIRRHVE VLNSSFSDAD DVKGAAAALS
101: SLAKTDENVE MMVENGAIPA LVRNLESPWS LAISGNVPKS CDHKLEKDCA VSLGLIAANQ PAYQQLIVDA GVIAPTVKLL KRRGVCIGCM EANAVLRRAA
201: DIITNIAHDN PRIKTNIRVE GGIPPLVELL DFPDVKVQRA AAGALRTVSF RNDENKNQIV ELNALPTLVL MLQSEDPSVH GESIGAIGNL VHSSPDIKKE
301: VIRAGALQPV IRLLSSTCLE TQREAALLIG QFAAPDSDCK VHIAQRGAIT PLIKMLESSD EQVTEMAAFA LGRLAQDTHN QAGIGQRGGI ISLLNLLDVK
401: TGSVQHNAAF ALYGLADNEE NVADFIKTGG IQKLQDDNFT VQPTRDCVVR TLKRLENKIQ GPVLNQLLYL IKTTEKNIQM RIALALAHLC DPKDGKLIFI
501: DNSGIEFLLE PLYISSMKQQ KYSARALFEL ATKATSFAPE DSAPSSPTQR AFLGEEFVNN PTLSDVTFLI DGKQFFAHKI CLVASSDIFR AMFDGLYKER
601: NAQNVEIPNI SWEVFELMMR FIYTRKINIT KYLAQELLVA ADQYLLDGLK RLCEYTIAQD ICVENIPFMY DLADTFNASA LRRACTLFVL EHYTKLSSEL
701: WFPMFIKKII PEIRSYITDI LGRPVQASS

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.