CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX84793
CDY10780
CDY15409
CDY16196
CDY16697
CDY23948
CDY24744
CDY45004
CDY46437
CDY49642
CDY50732
CDY62377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	CDY16196	AT1G26830.1	15659098
AT5G13060.1	CDY45004	AT1G26830.1	15659098
AT5G13060.1	CDY46437	AT1G26830.1	15659098
AT5G13060.1	CDY50732	AT1G26830.1	15659098
AT5G13060.1	CDX84793	AT2G31270.1	18818695
AT5G13060.1	CDY10780	AT2G31270.1	18818695
AT5G13060.1	CDY15409	AT2G31270.1	18818695
AT5G13060.1	CDY23948	AT2G31270.1	18818695
AT5G13060.1	CDY24744	AT2G31270.1	18818695
AT5G13060.1	CDY16697	AT4G14700.1	18818695
AT5G13060.1	CDY62377	AT4G14700.1	18818695
AT5G13060.1	CDX69432	AT5G16690.1	18818695
AT5G13060.1	CDY49642	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97221	Canola	cytosol, mitochondrion	97.03	97.03
Bra008860.1-P	Field mustard	plastid	95.62	95.62
CDX91149	Canola	cytosol, mitochondrion	88.68	86.01
CDX85673	Canola	plastid	88.68	85.54
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	85.43	81.95
CDY51336	Canola	mitochondrion	20.08	60.68
Solyc06g084250.2.1	Tomato	cytosol	55.16	55.32
Solyc09g065210.2.1	Tomato	cytosol	55.3	55.23
VIT_07s0104g00020.t01	Wine grape	cytosol	54.31	54.47
CDX88895	Canola	cytosol, nucleus, plastid	54.88	54.27
CDX92539	Canola	cytosol	53.47	53.92
HORVU1Hr1G062160.1	Barley	cytosol	52.33	51.39
EES19490	Sorghum	nucleus	53.89	51.14
CDY15719	Canola	plastid	10.04	51.08
GSMUA_Achr9P17600_001	Banana	cytosol	53.75	51.08
TraesCS1A01G249400.1	Wheat	cytosol	52.19	50.41
KRG95533	Soybean	cytosol	50.49	50.07
TraesCS1B01G260100.1	Wheat	cytosol	52.33	49.87
TraesCS1D01G248900.1	Wheat	cytosol	52.33	49.87
KRH67208	Soybean	cytosol	49.65	49.79
Zm00001d038134_P001	Maize	cytosol	53.75	47.8
GSMUA_Achr10P...	Banana	cytosol	11.6	47.4
Os05t0398100-01	Rice	cytosol	14.99	47.32
Zm00001d010341_P002	Maize	cytosol	51.06	47.07
GSMUA_Achr10P...	Banana	endoplasmic reticulum	25.6	46.41
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	15.7	44.76
GSMUA_Achr2P00100_001	Banana	cytosol	11.74	44.62
GSMUA_Achr10P...	Banana	cytosol	12.16	43.0
GSMUA_Achr2P00090_001	Banana	cytosol	11.32	42.78
CDX70872	Canola	cytosol	23.2	42.38
CDX70871	Canola	cytosol	15.56	41.2
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	11.17	39.11
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	20.93	34.1
CDY13990	Canola	nucleus	53.18	29.72

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	EnsemblPlants:CDX69674	ProteinID:CDX69674	ProteinID:CDX69674.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00135701001	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514
PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf
SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0004EEA95A	SEG:seg

Description

BnaA10g20230D

Coordinates

chrLK031790:-:1294169..1298105

Molecular Weight (calculated)

78382.0 Da

IEP (calculated)

6.339

GRAVY (calculated)

-0.019

Length

707 amino acids

Sequence
(BLAST)

001: MESQQKRQRT TRLAGRNLRR KLSRETDASS SIVMQITEVV DEEADLVVAI RRHVEVLNSS FSDREAVKEA AAAISSLAKI DENVEMMVEN GVIPALVRYL
101: ESPWSLAINP NVPKSCDHKL EKDCAVSLGL IAAIQPGYQQ LIVDAGAIVP TVKLLKRRGV CLGCMEANAV IRRAADIITN IAHDNPRIKT NIRVEGGIPP
201: LVELLNFPDV KVQRAAAGAL RTVSFRNDDN KNQIVELNAL PTLVLMLQSE DPSMHGEAIG AIGNLVHSSP DIKKDVIRAG ALQPVISLLS STCLETQREA
301: ALLIGQFASP DSDCKVHIAQ RGAITPLIKM LESSDEQVME MSAFALGRLA QDTHNQAGIG QRGGIISLLN LLDVNTGSVQ HNAAFALYGL ADNEENLADF
401: IKAGGIQRLQ DDNFTVQPTR DCVVRTLKRL ENKVHGPVLN QLLYLMRTTE KPIQMRIALA LAHLCDPKDG KLIFIDNNGV EFLLELLYLS GMKQQKYSSR
501: ALFELARKAT SFAPEDSAPS SPTQRVFLGA EFVNNPTLSD VTFLVDGKQF YAHKICLVAS SDIFRAMFDG LYKERNAQNV EIPNITWEVF ELMMRFIYTG
601: RIDITKHLAQ ELLVAADQYL IEGLKRLCEY TIAQDICVDN IPLMYDLADT FNASALRRAC TLFVLEHYTK LSSETWFPMF IKKIIPEIRT YITDILTRPV
701: QASSTVV

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.