Factsheet for GSMUA_Achr2P00090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	83.96	78.5
GSMUA_Achr10P...	Banana	cytosol	24.6	48.94
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	53.48	40.32
GSMUA_Achr10P...	Banana	endoplasmic reticulum	73.26	35.13
GSMUA_Achr2P00100_001	Banana	cytosol	32.09	32.26
CDX70871	Canola	cytosol	38.5	26.97
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	54.01	23.27
GSMUA_Achr10P...	Banana	cytosol	19.25	20.81
GSMUA_Achr9P17600_001	Banana	cytosol	62.57	15.73
VIT_07s0104g00020.t01	Wine grape	cytosol	58.82	15.6
VIT_05s0020g03020.t01	Wine grape	cytosol	59.36	15.57
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	16.58	15.35
PGSC0003DMT400051860	Potato	cytosol	57.75	15.23
KRH35552	Soybean	cytosol	57.22	15.13
AT5G19330.1	Thale cress	cytosol	57.22	15.07
Solyc06g084250.2.1	Tomato	cytosol	56.68	15.04
KRH77872	Soybean	cytosol	56.68	15.01
KRH27617	Soybean	cytosol	56.68	14.97
Bra002228.1-P	Field mustard	nucleus	57.22	14.78
PGSC0003DMT400051857	Potato	endoplasmic reticulum	14.44	14.75
KRG91259	Soybean	cytosol	55.62	14.71
Solyc09g065210.2.1	Tomato	cytosol	55.62	14.69
PGSC0003DMT400033530	Potato	cytosol	55.62	14.69
CDX88895	Canola	cytosol, nucleus, plastid	55.08	14.41
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	55.08	14.41
CDX92539	Canola	cytosol	50.8	13.55
KRG95533	Soybean	cytosol	48.66	12.76
KRH67208	Soybean	cytosol	47.59	12.62
CDY51336	Canola	mitochondrion	14.97	11.97
Bra023389.1-P	Field mustard	plastid	41.18	11.83
Bra008860.1-P	Field mustard	plastid	42.78	11.32
CDX69674	Canola	cytosol	42.78	11.32
CDX97221	Canola	cytosol, mitochondrion	41.71	11.03
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	43.32	10.99
CDX91149	Canola	cytosol, mitochondrion	41.18	10.56
CDX85673	Canola	plastid	41.18	10.5
CDY13990	Canola	nucleus	49.2	7.27
Bra030036.1-P	Field mustard	plastid	6.42	6.67
GSMUA_Achr10P...	Banana	extracellular	2.67	4.81
GSMUA_Achr2P00070_001	Banana	extracellular	2.67	3.27
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	1.07	3.17
CDY15719	Canola	plastid	2.14	2.88
GSMUA_Achr10P...	Banana	cytosol	1.07	2.41
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	1.07	1.38
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	0.53	0.36

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G00090_001	EnsemblPlants:GSMUA_Achr2P00090_001	EnsemblPlants:GSMUA_Achr2T00090_001
InterPro:IPR000210	InterPro:IPR011989	UniProt:M0S3V0	PFAM:PF00651	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI000296C30A	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G00090_001]

Coordinates

chr2:+:285168..288544

Molecular Weight (calculated)

20979.6 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.047

Length

187 amino acids

Sequence
(BLAST)

001: MKRLEEKING PVLKHLLYLM RVGEKVVQRR IALALAHLCL PEDQRTIFID DDGLDLLLEL LGSTNLKQQQ DASVALYKLA KKSLTLCFVD AASPSTSPQV
101: YLGEQYVNSS TLLDGTFLVE GCKCFYAHRI ALFASSDAFC AMFDGVYRCS YRYLPIDNFN LKCLSGVLLA IEKLASGHLR RHHHQNG

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.