Factsheet for GSMUA_Achr10P05220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00090_001	Banana	cytosol	78.5	83.96
GSMUA_Achr10P...	Banana	cytosol	24.0	51.06
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	54.0	43.55
GSMUA_Achr10P...	Banana	endoplasmic reticulum	74.5	38.21
GSMUA_Achr2P00100_001	Banana	cytosol	33.5	36.02
CDX70871	Canola	cytosol	37.0	27.72
GSMUA_Achr10P...	Banana	cytosol	23.5	27.17
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	56.0	25.81
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	19.0	18.81
VIT_05s0020g03020.t01	Wine grape	cytosol	61.5	17.25
GSMUA_Achr9P17600_001	Banana	cytosol	64.0	17.2
VIT_07s0104g00020.t01	Wine grape	cytosol	60.5	17.16
AT5G19330.1	Thale cress	cytosol	60.0	16.9
PGSC0003DMT400051860	Potato	cytosol	59.0	16.64
Bra002228.1-P	Field mustard	nucleus	60.0	16.57
KRH77872	Soybean	cytosol	58.5	16.57
KRH27617	Soybean	cytosol	58.5	16.53
Solyc06g084250.2.1	Tomato	cytosol	58.0	16.45
KRH35552	Soybean	cytosol	58.0	16.41
KRG91259	Soybean	cytosol	57.5	16.27
CDX88895	Canola	cytosol, nucleus, plastid	57.5	16.08
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	57.5	16.08
Solyc09g065210.2.1	Tomato	cytosol	56.5	15.96
PGSC0003DMT400033530	Potato	cytosol	56.5	15.96
PGSC0003DMT400051857	Potato	endoplasmic reticulum	14.0	15.3
CDX92539	Canola	cytosol	53.5	15.26
CDY51336	Canola	mitochondrion	16.5	14.1
KRH67208	Soybean	cytosol	49.0	13.9
KRG95533	Soybean	cytosol	49.0	13.74
Bra023389.1-P	Field mustard	plastid	41.5	12.75
Bra008860.1-P	Field mustard	plastid	43.0	12.16
CDX69674	Canola	cytosol	43.0	12.16
CDX97221	Canola	cytosol, mitochondrion	42.0	11.88
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	43.5	11.8
CDX91149	Canola	cytosol, mitochondrion	41.5	11.39
CDX85673	Canola	plastid	41.5	11.32
Bra030036.1-P	Field mustard	plastid	10.0	11.11
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	3.0	9.52
CDY13990	Canola	nucleus	52.0	8.22
CDY15719	Canola	plastid	5.5	7.91
GSMUA_Achr10P...	Banana	cytosol	3.0	7.23
GSMUA_Achr2P00070_001	Banana	extracellular	4.5	5.88
GSMUA_Achr10P...	Banana	extracellular	2.5	4.81
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	2.0	2.76
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	0.5	0.36

Protein Annotations

EnsemblPlants:GSMUA_Achr10P05220_001	EnsemblPlants:GSMUA_Achr10T05220_001	EnsemblPlantsGene:GSMUA_Achr10G05220_001	Gene3D:1.25.10.10	Gene3D:3.30.710.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:BTB/POZ_dom	InterPro:IPR000210
InterPro:IPR011989	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	PFAM:PF00651	SEG:seg
SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI000294EA76	UniProt:M0RFJ9	MapMan:35.1	:

Description

ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G05220_001]

Coordinates

chr10:+:14913110..14915999

Molecular Weight (calculated)

22272.0 Da

IEP (calculated)

7.714

GRAVY (calculated)

0.017

Length

200 amino acids

Sequence
(BLAST)

001: MISKISTFLS DFIKDCVAKT IKRLEEKING PVLKHLLYLM RVGEKSVQRH IALALAHLCS PEDQRTIFID DDGLDLLLEL LGSTNLKQQQ DASVALYKVA
101: KKSLTLYSVD AASPSPSPQV YLGEQYVNSS TLSDLTFLVE GCKCFYAHRI ALLASSDAFC AMFDGVYRCS YRYLPIDNFN LKCLSGCPRY QSKDHVGLGS

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.