Factsheet for GSMUA_Achr10P05310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 5
extracellular 4
golgi 3
plasma membrane 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	19.74	81.91
GSMUA_Achr10P...	Banana	cytosol	38.21	74.5
GSMUA_Achr2P00090_001	Banana	cytosol	35.13	73.26
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	44.62	70.16
GSMUA_Achr2P00100_001	Banana	cytosol	32.31	67.74
GSMUA_Achr10P...	Banana	cytosol	25.64	57.8
CDX70871	Canola	cytosol	37.69	55.06
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	57.95	52.07
PGSC0003DMT400051857	Potato	endoplasmic reticulum	23.33	49.73
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	24.62	47.52
GSMUA_Achr9P17600_001	Banana	cytosol	74.87	39.25
KRH27617	Soybean	cytosol	67.95	37.43
KRH35552	Soybean	cytosol	67.69	37.34
VIT_05s0020g03020.t01	Wine grape	cytosol	68.21	37.31
KRH77872	Soybean	cytosol	67.18	37.11
KRG91259	Soybean	cytosol	66.67	36.78
VIT_07s0104g00020.t01	Wine grape	cytosol	65.64	36.31
AT5G19330.1	Thale cress	cytosol	64.36	35.35
PGSC0003DMT400051860	Potato	cytosol	63.33	34.84
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	63.59	34.69
CDX88895	Canola	cytosol, nucleus, plastid	63.59	34.69
Bra002228.1-P	Field mustard	nucleus	64.36	34.67
PGSC0003DMT400033530	Potato	cytosol	62.56	34.46
Solyc06g084250.2.1	Tomato	cytosol	62.05	34.33
Solyc09g065210.2.1	Tomato	cytosol	62.31	34.32
CDX92539	Canola	cytosol	61.03	33.95
KRH67208	Soybean	cytosol	50.26	27.8
KRG95533	Soybean	cytosol	50.77	27.77
Bra023389.1-P	Field mustard	plastid	45.64	27.34
CDX69674	Canola	cytosol	46.41	25.6
Bra008860.1-P	Field mustard	plastid	46.15	25.46
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	47.95	25.37
CDX97221	Canola	cytosol, mitochondrion	45.64	25.18
CDX85673	Canola	plastid	46.92	24.97
CDX91149	Canola	cytosol, mitochondrion	45.64	24.42
CDY51336	Canola	mitochondrion	14.1	23.5
CDY13990	Canola	nucleus	60.26	18.58
Bra030036.1-P	Field mustard	plastid	8.21	17.78
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	2.82	17.46
GSMUA_Achr10P...	Banana	extracellular	4.62	17.31
GSMUA_Achr2P00070_001	Banana	extracellular	6.67	16.99
CDY15719	Canola	plastid	5.13	14.39
GSMUA_Achr10P...	Banana	cytosol	2.82	13.25
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	2.31	6.21
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	2.31	3.21

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G05310_001	EnsemblPlants:GSMUA_Achr10P05310_001
EnsemblPlants:GSMUA_Achr10T05310_001	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	UniProt:M0RFK8	PFAM:PF00651
PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF48371	SUPFAM:SSF54695	SignalP:SignalP-noTM	UniParc:UPI000294F436	SEG:seg	:

Description

ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G05310_001]

Coordinates

chr10:-:14975683..14979592

Molecular Weight (calculated)

43903.1 Da

IEP (calculated)

5.819

GRAVY (calculated)

0.004

Length

390 amino acids

Sequence
(BLAST)

001: MLFSHFPLSL IIMYAWTLPL YTSKEGENSV LEDSHNQTGI VYNGGLVPLL KLLDSKNGCL QHNAAFALYG IAENEDNVSD FIKVGGVQKL QVGEFIIQAT
101: KDCVAKTIKR LEEKINGRES SVLNHLLYLM RVGEKAVQRR IALALAHLCS LEDQRTIFID DNGLDLLLEL LVLTNLKQQQ DASVALYKLA KKSLTLCSVD
201: AASPSPSPQV YLGEQYVNSS TLSDVTFLVE GCKCFYAHRI ALLASSDAFR AMFDGGYREK DARDIEIPNI RWEVFELMMR FIYTGSVEIT TDIAQDLLQA
301: ADQYLLEGLK CLCEYAIAQE VCVDNVSSMY ELSEAFHAMS LRHNCVIFIL EQFEKINTRP GHSHLIQRIT PEIRNYFGKA LRPNLRKSLT

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.