Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003500.1-P | Field mustard | nucleus | 99.25 | 99.25 |
| CDX67893 | Canola | nucleus | 99.25 | 99.25 |
| CDX76636 | Canola | nucleus | 90.3 | 85.82 |
| CDY11421 | Canola | nucleus | 89.55 | 85.11 |
| AT3G62420.1 | Thale cress | nucleus | 85.82 | 78.77 |
| GSMUA_Achr11P... | Banana | nucleus | 56.72 | 52.78 |
| GSMUA_Achr8P22330_001 | Banana | nucleus | 55.22 | 51.39 |
| GSMUA_Achr11P... | Banana | nucleus | 52.24 | 50.36 |
| KRH68258 | Soybean | nucleus | 55.97 | 50.0 |
| KRG96525 | Soybean | nucleus | 55.97 | 50.0 |
| PGSC0003DMT400018832 | Potato | nucleus | 51.49 | 47.92 |
| GSMUA_Achr8P29960_001 | Banana | nucleus | 51.49 | 47.92 |
| VIT_07s0005g01450.t01 | Wine grape | nucleus | 51.49 | 47.59 |
| Solyc06g009640.1.1 | Tomato | nucleus | 50.0 | 46.53 |
| Solyc01g079480.2.1 | Tomato | nucleus | 50.0 | 46.53 |
| KRH69221 | Soybean | nucleus | 51.49 | 46.31 |
| PGSC0003DMT400088166 | Potato | nucleus | 48.51 | 45.14 |
| KRH31798 | Soybean | nucleus | 48.51 | 42.76 |
| KRH65972 | Soybean | nucleus | 37.31 | 40.98 |
| CDX76292 | Canola | nucleus | 39.55 | 37.32 |
| CDY17470 | Canola | nucleus | 39.55 | 37.32 |
| CDY31528 | Canola | nucleus | 39.55 | 37.32 |
| CDY29220 | Canola | nucleus | 41.79 | 36.13 |
| CDY39029 | Canola | nucleus | 41.79 | 35.44 |
| CDY30327 | Canola | nucleus, plastid | 44.03 | 35.12 |
| CDY52079 | Canola | nucleus | 41.04 | 34.81 |
| CDY53277 | Canola | nucleus, plastid | 43.28 | 34.52 |
| CDX75445 | Canola | nucleus | 39.55 | 34.42 |
| CDX69072 | Canola | nucleus | 39.55 | 34.42 |
| CDY46312 | Canola | nucleus | 42.54 | 33.93 |
| CDY20909 | Canola | nucleus | 42.54 | 33.53 |
| CDX85891 | Canola | nucleus | 43.28 | 32.95 |
| CDX68131 | Canola | nucleus | 43.28 | 32.4 |
| CDX72490 | Canola | nucleus | 36.57 | 32.03 |
| CDY45319 | Canola | nucleus | 35.82 | 31.37 |
| Os09t0306400-01 | Rice | nucleus | 33.58 | 29.41 |
| HORVU5Hr1G054510.1 | Barley | nucleus | 31.34 | 27.27 |
| TraesCS5D01G183500.1 | Wheat | nucleus | 31.34 | 27.27 |
| TraesCS5A01G179000.1 | Wheat | nucleus | 31.34 | 27.27 |
| EER96530 | Sorghum | nucleus | 32.09 | 27.04 |
| TraesCS5B01G176700.1 | Wheat | nucleus | 30.6 | 26.8 |
| Zm00001d005578_P001 | Maize | nucleus | 32.09 | 25.29 |
| EES14897 | Sorghum | nucleus, plastid | 29.1 | 22.16 |
| Zm00001d030577_P001 | Maize | nucleus | 25.37 | 21.52 |
| Os08t0357300-01 | Rice | cytosol | 17.91 | 21.24 |
| Zm00001d020025_P001 | Maize | endoplasmic reticulum, extracellular | 11.94 | 13.22 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078GIB9 | UniProt:A0A078GIB9 | EnsemblPlants:CDY25111 | ProteinID:CDY25111 |
| ProteinID:CDY25111.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00028978001 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF167 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EDFDEA | InterPro:bZIP | : | : | : |
Description
BnaC06g18530DBnaC06g18530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIB9]
Coordinates
chrLK032168:-:457647..458051
Molecular Weight (calculated)
15418.3 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.869
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKSPDSDN DPRYASVTDE RKRKRMISNR ESARRSRMRK QKQLGDLINE VTVLKNDNAK ITEQVDAATR RYVEMESKND VLRAQAVELT ERLRSLNSVL
101: EMVEEISGQA LDIPEIQNPW QIPCPIMQTN HGFC
101: EMVEEISGQA LDIPEIQNPW QIPCPIMQTN HGFC
001: MGSLQMQTSP ESDNDPRYAT VTDERKRKRM ISNRESARRS RMRKQKQLGD LINEVTLLKN DNAKITEQVD EASKKYIEME SKNNVLRAQA SELTDRLRSL
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
101: NSVLEMVEEI SGQALDIPEI PESMQNPWQM PCPMQPIRAS ADMFDC
Arabidopsis Description
BZIP53bZIP transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.