Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026895.1-P | Field mustard | nucleus | 76.69 | 64.1 |
| Bra026896.1-P | Field mustard | nucleus | 76.69 | 64.1 |
| AT1G13600.1 | Thale cress | nucleus | 69.33 | 57.65 |
| CDY45336 | Canola | nucleus | 69.33 | 57.07 |
| CDX98108 | Canola | nucleus | 68.71 | 56.57 |
| CDY37559 | Canola | nucleus | 68.71 | 56.57 |
| CDY46496 | Canola | nucleus | 47.24 | 43.02 |
| CDX99780 | Canola | nucleus | 46.01 | 41.9 |
| CDX85297 | Canola | nucleus | 44.17 | 41.86 |
| CDY66911 | Canola | nucleus | 42.94 | 40.7 |
| CDY71548 | Canola | nucleus | 42.33 | 40.59 |
| CDY48072 | Canola | nucleus | 42.33 | 40.59 |
| Solyc04g005170.1.1 | Tomato | nucleus | 46.01 | 39.27 |
| CDY04169 | Canola | nucleus | 42.33 | 39.2 |
| CDY33124 | Canola | nucleus | 42.33 | 39.2 |
| CDY35775 | Canola | nucleus | 41.1 | 39.18 |
| CDY45843 | Canola | nucleus | 28.83 | 39.17 |
| PGSC0003DMT400019465 | Potato | nucleus | 45.4 | 38.14 |
| PGSC0003DMT400004821 | Potato | nucleus | 44.79 | 37.63 |
| KRH75199 | Soybean | nucleus | 44.79 | 36.87 |
| CDX81569 | Canola | nucleus | 26.99 | 36.67 |
| VIT_01s0010g00930.t01 | Wine grape | nucleus | 41.72 | 34.87 |
| KRH71054 | Soybean | nucleus | 41.1 | 33.67 |
| CDX69495 | Canola | nucleus | 37.42 | 33.33 |
| Zm00001d052807_P001 | Maize | nucleus | 28.22 | 32.62 |
| CDX85530 | Canola | nucleus | 37.42 | 32.45 |
| CDX70656 | Canola | nucleus | 36.81 | 31.58 |
| CDX70639 | Canola | nucleus | 36.81 | 31.25 |
| CDY26467 | Canola | nucleus | 34.97 | 31.15 |
| CDX78655 | Canola | nucleus | 36.81 | 31.09 |
| CDX90970 | Canola | nucleus | 36.81 | 30.93 |
| GSMUA_Achr9P14690_001 | Banana | nucleus | 28.22 | 29.49 |
| GSMUA_Achr5P05350_001 | Banana | nucleus | 29.45 | 29.27 |
| GSMUA_Achr6P36230_001 | Banana | nucleus | 30.06 | 28.0 |
| GSMUA_Achr8P23510_001 | Banana | nucleus | 27.61 | 27.95 |
| Os02t0728001-00 | Rice | nucleus | 28.83 | 27.81 |
| Os09t0474000-01 | Rice | nucleus | 29.45 | 27.75 |
| Zm00001d015664_P001 | Maize | nucleus | 28.22 | 27.38 |
| TraesCS6D01G160200.1 | Wheat | nucleus | 29.45 | 27.27 |
| TraesCS6B01G198700.1 | Wheat | nucleus | 29.45 | 27.12 |
| TraesCS6A01G170600.1 | Wheat | nucleus | 29.45 | 27.12 |
| Os02t0191600-00 | Rice | nucleus | 32.52 | 26.63 |
| EES07324 | Sorghum | nucleus | 27.61 | 26.63 |
| EES06428 | Sorghum | nucleus | 28.83 | 26.55 |
| TraesCS7B01G293900.1 | Wheat | nucleus | 26.99 | 26.35 |
| Zm00001d005962_P001 | Maize | nucleus, plastid | 26.38 | 26.22 |
| HORVU5Hr1G070540.1 | Barley | nucleus | 30.67 | 26.04 |
| TraesCS7B01G293700.1 | Wheat | nucleus | 26.38 | 25.75 |
| CDY42835 | Canola | nucleus | 27.61 | 25.42 |
| Zm00001d053703_P001 | Maize | nucleus | 26.99 | 25.0 |
| CDY51629 | Canola | nucleus | 28.83 | 24.87 |
| CDY40812 | Canola | nucleus | 26.99 | 24.86 |
| EER96905 | Sorghum | nucleus | 28.22 | 24.73 |
| HORVU1Hr1G013620.1 | Barley | nucleus | 27.61 | 24.73 |
| CDY02193 | Canola | nucleus | 27.61 | 24.59 |
| TraesCS5A01G250400.1 | Wheat | nucleus | 29.45 | 24.49 |
| Zm00001d017911_P001 | Maize | nucleus | 26.38 | 24.43 |
| Zm00001d031272_P001 | Maize | nucleus | 30.06 | 24.26 |
| Zm00001d051739_P001 | Maize | nucleus | 22.09 | 24.0 |
| HORVU2Hr1G098530.1 | Barley | nucleus | 25.77 | 23.73 |
| TraesCS6D01G270000.1 | Wheat | nucleus | 28.83 | 23.62 |
| HORVU6Hr1G072490.1 | Barley | nucleus | 28.22 | 23.47 |
| TraesCS6B01G318700.1 | Wheat | nucleus | 29.45 | 23.19 |
| Zm00001d020823_P001 | Maize | nucleus | 27.61 | 23.08 |
| TraesCS7D01G213200.1 | Wheat | nucleus | 25.77 | 22.83 |
| TraesCS5B01G248400.1 | Wheat | nucleus | 26.99 | 22.8 |
| TraesCS5D01G258000.1 | Wheat | nucleus | 26.99 | 22.8 |
| Zm00001d046664_P001 | Maize | nucleus | 25.77 | 22.46 |
| KXG19789 | Sorghum | nucleus | 25.77 | 22.34 |
| TraesCS6A01G288900.1 | Wheat | nucleus | 28.22 | 22.33 |
| TraesCS7B01G118500.1 | Wheat | nucleus | 25.15 | 22.28 |
| TraesCS7D01G182900.1 | Wheat | nucleus | 30.06 | 22.17 |
| TraesCS7A01G211500.1 | Wheat | nucleus | 25.15 | 22.16 |
| TraesCS7A01G181100.1 | Wheat | nucleus | 29.45 | 22.12 |
| HORVU6Hr1G034810.1 | Barley | nucleus | 28.83 | 21.96 |
| CDY66792 | Canola | nucleus | 21.47 | 21.34 |
| KXG20422 | Sorghum | nucleus | 25.77 | 21.21 |
| CDX78324 | Canola | nucleus | 22.09 | 21.18 |
| CDX87188 | Canola | nucleus | 28.22 | 21.1 |
| KXG25724 | Sorghum | nucleus | 29.45 | 20.78 |
| HORVU7Hr1G037230.2 | Barley | nucleus | 28.22 | 20.72 |
| TraesCS7B01G086100.1 | Wheat | nucleus | 28.22 | 20.63 |
| HORVU7Hr1G043080.1 | Barley | nucleus | 23.93 | 20.1 |
| Os08t0487100-01 | Rice | nucleus | 28.22 | 20.0 |
| CDX70638 | Canola | nucleus | 19.63 | 19.75 |
| CDX70640 | Canola | nucleus | 18.4 | 18.87 |
| Zm00001d037360_P001 | Maize | nucleus | 21.47 | 17.68 |
| CDY16837 | Canola | nucleus | 23.93 | 17.65 |
| TraesCS7A01G391800.1 | Wheat | mitochondrion | 22.7 | 15.29 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078FT60 | UniProt:A0A078FT60 | EnsemblPlants:CDY16099 | ProteinID:CDY16099 |
| ProteinID:CDY16099.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00090513001 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF133 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EDCC09 | InterPro:bZIP | SEG:seg | : | : |
Description
BnaC08g40240DBnaC08g40240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT60]
Coordinates
chrLK032060:-:587638..588326
Molecular Weight (calculated)
19510.0 Da
IEP (calculated)
8.444
GRAVY (calculated)
-0.974
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSEVIIFLS SSITTFFLNE QIFTKKKKKI KYIYIYIYAS DEDHQQSMAI DERKQRRMIS NRESARRSRM RKQRHLDELW SQVIRLRTDN HCLIDKLNNV
101: SESHELALKE NAKLKEETSD LRQLLSEIKS NNEDDNNFLR DLEDSISNTR SGSDQRGRDF ELY
101: SESHELALKE NAKLKEETSD LRQLLSEIKS NNEDDNNFLR DLEDSISNTR SGSDQRGRDF ELY
001: MNTIPAELTG YFHYLPPDKY NNQTPIMESE YFNMPSSPTS CSSFYHLNGL INNNNYSSSS NGQDLMTSNN STSDEDHQQS MVIDERKQRR MISNRESARR
101: SRMRKQRHLD ELWSQVIRLR TDNHCLMDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSHNEDDNS FLRELEDSIS NSRSDSNQSG RDFELC
101: SRMRKQRHLD ELWSQVIRLR TDNHCLMDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSHNEDDNS FLRELEDSIS NSRSDSNQSG RDFELC
Arabidopsis Description
AtbZIP58BZIP58 [Source:UniProtKB/TrEMBL;Acc:A0A178WP44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.