Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04038.1 | CDX98108 | AT1G13600.1 | 16709202 |
| AT2G04038.1 | CDY16099 | AT1G13600.1 | 16709202 |
| AT2G04038.1 | CDY37559 | AT1G13600.1 | 16709202 |
| AT2G04038.1 | CDY45336 | AT1G13600.1 | 16709202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48072 | Canola | nucleus | 97.06 | 97.06 |
| CDY33124 | Canola | nucleus | 82.35 | 79.55 |
| CDY04169 | Canola | nucleus | 82.35 | 79.55 |
| CDX99780 | Canola | nucleus | 77.06 | 73.18 |
| CDY46496 | Canola | nucleus | 77.06 | 73.18 |
| AT2G04038.1 | Thale cress | nucleus | 67.06 | 68.67 |
| CDY45336 | Canola | nucleus | 60.0 | 51.52 |
| CDY37559 | Canola | nucleus | 59.41 | 51.01 |
| CDX98108 | Canola | nucleus | 59.41 | 51.01 |
| CDY16099 | Canola | nucleus | 40.59 | 42.33 |
| CDY35775 | Canola | nucleus | 42.35 | 42.11 |
| CDY45843 | Canola | nucleus | 29.41 | 41.67 |
| CDX81569 | Canola | nucleus | 28.82 | 40.83 |
| PGSC0003DMT400019465 | Potato | nucleus | 46.47 | 40.72 |
| CDX85297 | Canola | nucleus | 41.18 | 40.7 |
| CDY66911 | Canola | nucleus | 41.18 | 40.7 |
| VIT_01s0010g00930.t01 | Wine grape | nucleus | 46.47 | 40.51 |
| Solyc04g005170.1.1 | Tomato | nucleus | 43.53 | 38.74 |
| KRH71054 | Soybean | nucleus | 43.53 | 37.19 |
| PGSC0003DMT400004821 | Potato | nucleus | 41.18 | 36.08 |
| KRH75199 | Soybean | nucleus | 41.18 | 35.35 |
| CDY26467 | Canola | nucleus | 36.47 | 33.88 |
| CDX85530 | Canola | nucleus | 37.06 | 33.51 |
| GSMUA_Achr9P14690_001 | Banana | nucleus | 30.59 | 33.33 |
| Zm00001d052807_P001 | Maize | nucleus | 27.65 | 33.33 |
| CDX78655 | Canola | nucleus | 37.65 | 33.16 |
| CDX70656 | Canola | nucleus | 37.06 | 33.16 |
| CDX70639 | Canola | nucleus | 37.06 | 32.81 |
| CDX69495 | Canola | nucleus | 35.29 | 32.79 |
| GSMUA_Achr8P23510_001 | Banana | nucleus | 30.0 | 31.68 |
| CDX90970 | Canola | nucleus | 35.88 | 31.44 |
| EES07324 | Sorghum | nucleus | 31.18 | 31.36 |
| Zm00001d015664_P001 | Maize | nucleus | 30.0 | 30.36 |
| Os02t0728001-00 | Rice | nucleus | 30.0 | 30.18 |
| TraesCS6D01G160200.1 | Wheat | nucleus | 29.41 | 28.41 |
| TraesCS6A01G170600.1 | Wheat | nucleus | 29.41 | 28.25 |
| GSMUA_Achr5P05350_001 | Banana | nucleus | 27.06 | 28.05 |
| GSMUA_Achr6P36230_001 | Banana | nucleus | 28.82 | 28.0 |
| Zm00001d017911_P001 | Maize | nucleus | 28.82 | 27.84 |
| TraesCS6B01G198700.1 | Wheat | nucleus | 28.82 | 27.68 |
| TraesCS6D01G270000.1 | Wheat | nucleus | 32.35 | 27.64 |
| Zm00001d005962_P001 | Maize | nucleus, plastid | 26.47 | 27.44 |
| Zm00001d051739_P001 | Maize | nucleus | 24.12 | 27.33 |
| Os02t0191600-00 | Rice | nucleus | 31.76 | 27.14 |
| HORVU2Hr1G098530.1 | Barley | nucleus | 28.24 | 27.12 |
| Os09t0474000-01 | Rice | nucleus | 27.06 | 26.59 |
| HORVU6Hr1G072490.1 | Barley | nucleus | 30.59 | 26.53 |
| TraesCS7B01G118500.1 | Wheat | nucleus | 28.24 | 26.09 |
| TraesCS6B01G318700.1 | Wheat | nucleus | 31.76 | 26.09 |
| TraesCS7D01G213200.1 | Wheat | nucleus | 28.24 | 26.09 |
| TraesCS7A01G211500.1 | Wheat | nucleus | 28.24 | 25.95 |
| TraesCS6A01G288900.1 | Wheat | nucleus | 31.18 | 25.73 |
| HORVU1Hr1G013620.1 | Barley | nucleus | 27.06 | 25.27 |
| TraesCS7B01G293900.1 | Wheat | nucleus | 24.71 | 25.15 |
| HORVU5Hr1G070540.1 | Barley | nucleus | 28.24 | 25.0 |
| TraesCS5A01G250400.1 | Wheat | nucleus | 28.82 | 25.0 |
| CDY40812 | Canola | nucleus | 25.88 | 24.86 |
| KXG19789 | Sorghum | nucleus | 27.06 | 24.47 |
| CDY66792 | Canola | nucleus | 23.53 | 24.39 |
| EES06428 | Sorghum | nucleus | 25.29 | 24.29 |
| CDY42835 | Canola | nucleus | 25.29 | 24.29 |
| CDX78324 | Canola | nucleus | 24.12 | 24.12 |
| Zm00001d020823_P001 | Maize | nucleus | 27.65 | 24.1 |
| TraesCS5B01G248400.1 | Wheat | nucleus | 27.06 | 23.83 |
| HORVU7Hr1G043080.1 | Barley | nucleus | 27.06 | 23.71 |
| CDY02193 | Canola | nucleus | 25.29 | 23.5 |
| TraesCS7B01G293700.1 | Wheat | nucleus | 22.94 | 23.35 |
| CDY51629 | Canola | nucleus | 25.88 | 23.28 |
| EER96905 | Sorghum | nucleus | 25.29 | 23.12 |
| Zm00001d031272_P001 | Maize | nucleus | 27.06 | 22.77 |
| TraesCS7A01G181100.1 | Wheat | nucleus | 28.82 | 22.58 |
| TraesCS5D01G258000.1 | Wheat | nucleus | 25.29 | 22.28 |
| Zm00001d037360_P001 | Maize | nucleus | 25.88 | 22.22 |
| Zm00001d053703_P001 | Maize | nucleus | 22.94 | 22.16 |
| HORVU6Hr1G034810.1 | Barley | nucleus | 27.65 | 21.96 |
| Os08t0487100-01 | Rice | nucleus | 29.41 | 21.74 |
| TraesCS7D01G182900.1 | Wheat | nucleus | 28.24 | 21.72 |
| CDX87188 | Canola | nucleus | 27.65 | 21.56 |
| KXG25724 | Sorghum | nucleus | 28.82 | 21.21 |
| HORVU7Hr1G037230.2 | Barley | nucleus | 27.65 | 21.17 |
| Zm00001d046664_P001 | Maize | nucleus | 22.94 | 20.86 |
| TraesCS7B01G086100.1 | Wheat | nucleus | 27.06 | 20.63 |
| KXG20422 | Sorghum | nucleus | 23.53 | 20.2 |
| CDX70638 | Canola | nucleus | 18.82 | 19.75 |
| CDY16837 | Canola | nucleus | 24.71 | 19.0 |
| CDX70640 | Canola | nucleus | 16.47 | 17.61 |
| TraesCS7A01G391800.1 | Wheat | mitochondrion | 24.12 | 16.94 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078JVE1 | UniProt:A0A078JVE1 | EnsemblPlants:CDY71548 | ProteinID:CDY71548 |
| ProteinID:CDY71548.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00017079001 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF133 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EB5C29 | InterPro:bZIP | SEG:seg | : | : |
Description
BnaCnng73390DBnaCnng73390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVE1]
Coordinates
chrLK046317:+:1650..2162
Molecular Weight (calculated)
19888.3 Da
IEP (calculated)
7.571
GRAVY (calculated)
-0.904
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPAEITGYF QYLSQENLTM IPAEFNVINM PSSPTSSSSL NYLNDLINNN NYSSSSNGQD LMLSNNSTSD EDHHYNHRQS IIILDERKQR RMLSNRESAR
101: RSRMRKQRHL DELWSQVIRL RNENNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF
101: RSRMRKQRHL DELWSQVIRL RNENNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF
001: MIPAEINGYF QYLSPEYNVI NMPSSPTSSL NYLNDLIINN NNYSSSSNSQ DLMISNNSTS DEDHHQSIMV LDERKQRRML SNRESARRSR MRKQRHLDEL
101: WSQVIRLRNE NNCLIDKLNR VSETQNCVLK ENSKLKEEAS DLRQLVCELK SNKNNNNSFP REFEDN
101: WSQVIRLRNE NNCLIDKLNR VSETQNCVLK ENSKLKEEAS DLRQLVCELK SNKNNNNSFP REFEDN
Arabidopsis Description
AtbZIP48BZIP48 [Source:UniProtKB/TrEMBL;Acc:A0A178VS52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.