CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68131
CDX85297
CDX85411
CDX85891
CDX86233
CDX98108
CDY16099
CDY35775
CDY37559
CDY39029
CDY45336
CDY49605
CDY52079
CDY66911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30530.1	CDX98108	AT1G13600.1	16709202
AT3G30530.1	CDY16099	AT1G13600.1	16709202
AT3G30530.1	CDY37559	AT1G13600.1	16709202
AT3G30530.1	CDY45336	AT1G13600.1	16709202
AT3G30530.1	CDX68131	AT1G75390.1	16709202
AT3G30530.1	CDX85891	AT1G75390.1	16709202
AT3G30530.1	CDY39029	AT1G75390.1	16709202
AT3G30530.1	CDY52079	AT1G75390.1	16709202
AT3G30530.1	CDX85297	AT3G30530.1	16709202
AT3G30530.1	CDY35775	AT3G30530.1	16709202
AT3G30530.1	CDY66911	AT3G30530.1	16709202
AT3G30530.1	CDX85411	AT5G49450.1	16709202
AT3G30530.1	CDX86233	AT5G49450.1	16709202
AT3G30530.1	CDY49605	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66911	Canola	nucleus	68.6	68.6
AT3G30530.1	Thale cress	nucleus	68.02	67.63
CDY35775	Canola	nucleus	63.37	63.74
PGSC0003DMT400003516	Potato	nucleus	52.91	50.56
Solyc02g089420.1.1	Tomato	nucleus	52.91	50.56
VIT_14s0083g00700.t01	Wine grape	nucleus	54.65	47.47
KRH01443	Soybean	nucleus	51.16	45.13
KRH45160	Soybean	nucleus	50.58	45.08
CDY16099	Canola	nucleus	41.86	44.17
CDX85530	Canola	nucleus	47.09	43.09
KRH18312	Soybean	nucleus	52.33	42.06
KRG93749	Soybean	nucleus	53.49	41.82
CDX90970	Canola	nucleus	47.09	41.75
Solyc03g046440.1.1	Tomato	nucleus	41.86	41.62
CDX70656	Canola	nucleus	45.93	41.58
CDY71548	Canola	nucleus	40.7	41.18
CDY48072	Canola	nucleus	40.12	40.59
CDX69495	Canola	nucleus	43.02	40.44
CDY26467	Canola	nucleus	43.02	40.44
CDX78655	Canola	nucleus	45.35	40.41
CDX70639	Canola	nucleus	44.77	40.1
CDY45843	Canola	nucleus	27.33	39.17
CDY37559	Canola	nucleus	44.77	38.89
CDY45336	Canola	nucleus	44.77	38.89
CDX98108	Canola	nucleus	44.77	38.89
CDX99780	Canola	nucleus	40.12	38.55
CDY33124	Canola	nucleus	38.95	38.07
CDY04169	Canola	nucleus	38.95	38.07
CDY46496	Canola	nucleus	39.53	37.99
CDX81569	Canola	nucleus	25.58	36.67
Zm00001d052807_P001	Maize	nucleus	29.07	35.46
GSMUA_Achr6P36230_001	Banana	nucleus	34.3	33.71
GSMUA_Achr9P14690_001	Banana	nucleus	30.23	33.33
GSMUA_Achr8P23510_001	Banana	nucleus	30.81	32.92
Os02t0728001-00	Rice	nucleus	31.4	31.95
EES07324	Sorghum	nucleus	30.23	30.77
GSMUA_Achr5P05350_001	Banana	nucleus	29.07	30.49
CDY42835	Canola	nucleus	30.81	29.94
CDY40812	Canola	nucleus	30.23	29.38
Zm00001d051739_P001	Maize	nucleus	25.58	29.33
Zm00001d017911_P001	Maize	nucleus	29.65	28.98
Os02t0191600-00	Rice	nucleus	33.14	28.64
CDX70638	Canola	nucleus	26.74	28.4
TraesCS7B01G293700.1	Wheat	nucleus	27.33	28.14
TraesCS7B01G293900.1	Wheat	nucleus	26.74	27.54
Zm00001d005962_P001	Maize	nucleus, plastid	26.16	27.44
TraesCS6A01G170600.1	Wheat	nucleus	27.91	27.12
EES06428	Sorghum	nucleus	27.91	27.12
HORVU5Hr1G070540.1	Barley	nucleus	30.23	27.08
EER96905	Sorghum	nucleus	29.07	26.88
Zm00001d015664_P001	Maize	nucleus	26.16	26.79
TraesCS6B01G198700.1	Wheat	nucleus	27.33	26.55
CDX70640	Canola	nucleus	24.42	26.42
HORVU1Hr1G013620.1	Barley	nucleus	27.91	26.37
CDY02193	Canola	nucleus	27.91	26.23
TraesCS6D01G160200.1	Wheat	nucleus	26.74	26.14
TraesCS6D01G270000.1	Wheat	nucleus	30.23	26.13
TraesCS6B01G318700.1	Wheat	nucleus	31.4	26.09
TraesCS5A01G250400.1	Wheat	nucleus	29.65	26.02
Os09t0474000-01	Rice	nucleus	26.16	26.01
TraesCS7A01G181100.1	Wheat	nucleus	32.56	25.81
Zm00001d020823_P001	Maize	nucleus	29.07	25.64
HORVU6Hr1G072490.1	Barley	nucleus	29.07	25.51
HORVU2Hr1G098530.1	Barley	nucleus	26.16	25.42
CDY51629	Canola	nucleus	27.91	25.4
TraesCS7D01G182900.1	Wheat	nucleus	32.56	25.34
HORVU7Hr1G043080.1	Barley	nucleus	28.49	25.26
HORVU7Hr1G037230.2	Barley	nucleus	31.98	24.77
TraesCS6A01G288900.1	Wheat	nucleus	29.65	24.76
CDY66792	Canola	nucleus	23.26	24.39
TraesCS5D01G258000.1	Wheat	nucleus	27.33	24.35
TraesCS5B01G248400.1	Wheat	nucleus	27.33	24.35
TraesCS7A01G211500.1	Wheat	nucleus	26.16	24.32
TraesCS7B01G086100.1	Wheat	nucleus	31.4	24.22
TraesCS7B01G118500.1	Wheat	nucleus	25.58	23.91
TraesCS7D01G213200.1	Wheat	nucleus	25.58	23.91
Zm00001d053703_P001	Maize	nucleus	23.84	23.3
KXG25724	Sorghum	nucleus	30.81	22.94
KXG19789	Sorghum	nucleus	25.0	22.87
Zm00001d031272_P001	Maize	nucleus	26.16	22.28
KXG20422	Sorghum	nucleus	25.58	22.22
Zm00001d037360_P001	Maize	nucleus	25.58	22.22
Os08t0487100-01	Rice	nucleus	29.65	22.17
CDX87188	Canola	nucleus	27.33	21.56
HORVU6Hr1G034810.1	Barley	nucleus	26.74	21.5
CDX78324	Canola	nucleus	20.35	20.59
CDY16837	Canola	nucleus	26.16	20.36
Zm00001d046664_P001	Maize	nucleus	20.93	19.25
TraesCS7A01G391800.1	Wheat	mitochondrion	23.84	16.94

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078D866	EnsemblPlants:CDX85297	ProteinID:CDX85297	ProteinID:CDX85297.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00142959001	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF349	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EC8745	InterPro:bZIP	:

Description

BnaC07g26080D

Coordinates

chrLK031841:+:989761..990279

Molecular Weight (calculated)

20086.4 Da

IEP (calculated)

5.661

GRAVY (calculated)

-1.006

Length

172 amino acids

Sequence
(BLAST)

001: MQPQTDVFSL QNYLNSSIPS PYPSHFQISS PFPINGQNPN SFYGFQNATN NPQSMGLSSN NSTSDEAEEQ QTDKNIINER KQRRMISNRE SARRSRMRKQ
101: RHLDELWSQV MWLRIENHQL LDKLNNLSES HEKVLQENAQ LKEETSDLKQ VISDMQIQSP FSCFRDDIIP IE

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.