Factsheet for Solyc02g089420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g089420.1.1
Solyc03g005240.1.1
Solyc03g046440.1.1
Solyc04g005170.1.1
Solyc06g053930.2.1
Solyc07g053450.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g010800.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30530.1	Solyc04g005170.1.1	AT1G13600.1	16709202
AT3G30530.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G30530.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G30530.1	Solyc02g089420.1.1	AT3G30530.1	16709202
AT3G30530.1	Solyc03g046440.1.1	AT3G30530.1	16709202
AT5G15830.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G15830.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G15830.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G15830.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G15830.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G15830.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G15830.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G38800.1	Solyc07g053450.2.1	AT3G58120.1	17719007
AT5G38800.1	Solyc12g010800.1.1	AT3G58120.1	17719007
AT5G38800.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G38800.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G38800.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G38800.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G38800.1	Solyc02g089420.1.1	AT5G38800.1	17719007
AT5G38800.1	Solyc03g046440.1.1	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003516	Potato	nucleus	95.56	95.56
Solyc03g046440.1.1	Tomato	nucleus	57.22	59.54
CDX85297	Canola	nucleus	50.56	52.91
VIT_14s0083g00700.t01	Wine grape	nucleus	57.22	52.02
CDY66911	Canola	nucleus	49.44	51.74
AT3G30530.1	Thale cress	nucleus	49.44	51.45
Bra025418.1-P	Field mustard	nucleus	47.78	50.0
KRH01443	Soybean	nucleus	53.89	49.74
KRH45160	Soybean	nucleus	53.33	49.74
CDY35775	Canola	nucleus	46.11	48.54
Bra020735.1-P	Field mustard	nucleus	45.56	47.95
AT5G38800.1	Thale cress	nucleus	42.22	46.06
KRH18312	Soybean	nucleus	52.78	44.39
KRG93749	Soybean	nucleus	52.22	42.73
CDY26467	Canola	nucleus	43.33	42.62
CDX69495	Canola	nucleus	43.33	42.62
CDX85530	Canola	nucleus	44.44	42.55
Bra023540.1-P	Field mustard	nucleus	44.44	42.55
Bra008670.1-P	Field mustard	nucleus	42.78	42.08
Bra006324.1-P	Field mustard	nucleus	41.67	41.44
AT5G15830.1	Thale cress	nucleus	42.78	41.4
CDX90970	Canola	nucleus	43.33	40.21
CDX70656	Canola	nucleus	42.22	40.0
CDX78655	Canola	nucleus	42.78	39.9
GSMUA_Achr8P23510_001	Banana	nucleus	35.0	39.13
GSMUA_Achr9P14690_001	Banana	nucleus	33.89	39.1
CDX70639	Canola	nucleus	41.67	39.06
Os02t0728001-00	Rice	nucleus	36.11	38.46
Solyc04g005170.1.1	Tomato	nucleus	40.56	38.22
EES07324	Sorghum	nucleus	32.22	34.32
GSMUA_Achr6P36230_001	Banana	nucleus	33.33	34.29
Zm00001d017911_P001	Maize	nucleus	33.33	34.09
Zm00001d052807_P001	Maize	nucleus	26.11	33.33
Zm00001d051739_P001	Maize	nucleus	26.67	32.0
TraesCS7B01G293900.1	Wheat	nucleus	28.89	31.14
Os09t0474000-01	Rice	nucleus	28.89	30.06
TraesCS7B01G293700.1	Wheat	nucleus	27.78	29.94
CDX70638	Canola	nucleus	26.67	29.63
GSMUA_Achr5P05350_001	Banana	nucleus	26.67	29.27
TraesCS5B01G248400.1	Wheat	nucleus	31.11	29.02
EES06428	Sorghum	nucleus	28.33	28.81
TraesCS6D01G270000.1	Wheat	nucleus	31.67	28.64
Zm00001d015664_P001	Maize	nucleus	26.67	28.57
TraesCS5A01G250400.1	Wheat	nucleus	31.11	28.57
TraesCS6B01G318700.1	Wheat	nucleus	32.78	28.5
EER96905	Sorghum	nucleus	29.44	28.49
TraesCS7D01G213200.1	Wheat	nucleus	28.89	28.26
HORVU5Hr1G070540.1	Barley	nucleus	30.0	28.12
HORVU6Hr1G072490.1	Barley	nucleus	30.56	28.06
TraesCS6D01G160200.1	Wheat	nucleus	27.22	27.84
TraesCS7B01G118500.1	Wheat	nucleus	28.33	27.72
Zm00001d020823_P001	Maize	nucleus	30.0	27.69
TraesCS7D01G182900.1	Wheat	nucleus	33.89	27.6
Zm00001d005962_P001	Maize	nucleus, plastid	25.0	27.44
Zm00001d031272_P001	Maize	nucleus	30.56	27.23
TraesCS7A01G181100.1	Wheat	nucleus	32.78	27.19
TraesCS6B01G198700.1	Wheat	nucleus	26.67	27.12
CDX70640	Canola	nucleus	23.89	27.04
TraesCS7A01G211500.1	Wheat	nucleus	27.78	27.03
HORVU7Hr1G037230.2	Barley	nucleus	33.33	27.03
TraesCS7B01G086100.1	Wheat	nucleus	32.78	26.46
TraesCS5D01G258000.1	Wheat	nucleus	28.33	26.42
KXG25724	Sorghum	nucleus	33.89	26.41
HORVU1Hr1G013620.1	Barley	nucleus	26.67	26.37
Zm00001d053703_P001	Maize	nucleus	25.56	26.14
Os02t0191600-00	Rice	nucleus	28.89	26.13
HORVU2Hr1G098530.1	Barley	nucleus	25.56	25.99
HORVU7Hr1G043080.1	Barley	nucleus	27.78	25.77
TraesCS6A01G288900.1	Wheat	nucleus	29.44	25.73
KXG19789	Sorghum	nucleus	26.67	25.53
TraesCS6A01G170600.1	Wheat	nucleus	25.0	25.42
Os08t0487100-01	Rice	nucleus	31.11	24.35
Zm00001d037360_P001	Maize	nucleus	26.67	24.24
HORVU6Hr1G034810.1	Barley	nucleus	26.67	22.43
KXG20422	Sorghum	nucleus	23.89	21.72
Zm00001d046664_P001	Maize	nucleus	20.56	19.79
TraesCS7A01G391800.1	Wheat	mitochondrion	26.11	19.42

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K4BC93	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF365	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc02g089420.1
EnsemblPlants:Solyc02g089420.1.1	UniParc:UPI0002768A93	InterPro:bZIP	:	:	:

Description

No Description!

Coordinates

chr2:+:51257138..51257680

Molecular Weight (calculated)

21053.6 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.969

Length

180 amino acids

Sequence
(BLAST)

001: MQPTDVTDFY YLLPSNPTQF PSQSCVNYNP STFQLNTVLN PLYHLQITPQ VQDLNPQLTC FNSNSTSDEA DEQQWTLINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWAQ VLWLRNENHQ LLDKLNHASE RHDQVLQENA QLKNETSELR KMITGMQLSS PCPSSRALEN EPCSGLPQNE

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.