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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13600.1 EER96905 AT1G13600.1 16709202
AT1G13600.1 EES06428 AT1G13600.1 16709202
AT1G13600.1 EES07324 AT1G13600.1 16709202
AT1G13600.1 KXG19789 AT1G13600.1 16709202
AT1G13600.1 KXG20422 AT1G13600.1 16709202
AT1G13600.1 KXG25724 AT1G13600.1 16709202
AT1G13600.1 EER96905 AT2G04038.1 16709202
AT1G13600.1 EES06428 AT2G04038.1 16709202
AT1G13600.1 EES07324 AT2G04038.1 16709202
AT1G13600.1 KXG19789 AT2G04038.1 16709202
AT1G13600.1 KXG20422 AT2G04038.1 16709202
AT1G13600.1 KXG25724 AT2G04038.1 16709202
AT1G13600.1 EER96905 AT3G30530.1 16709202
AT1G13600.1 EES06428 AT3G30530.1 16709202
AT1G13600.1 EES07324 AT3G30530.1 16709202
AT1G13600.1 KXG19789 AT3G30530.1 16709202
AT1G13600.1 KXG20422 AT3G30530.1 16709202
AT1G13600.1 KXG25724 AT3G30530.1 16709202
AT1G13600.1 EER96530 AT3G62420.1 16709202
AT1G13600.1 EES14897 AT3G62420.1 16709202
AT1G13600.1 EER96530 AT4G34590.1 16709202
AT1G13600.1 EES14897 AT4G34590.1 16709202
AT2G04038.1 EER96905 AT1G13600.1 16709202
AT2G04038.1 EES06428 AT1G13600.1 16709202
AT2G04038.1 EES07324 AT1G13600.1 16709202
AT2G04038.1 KXG19789 AT1G13600.1 16709202
AT2G04038.1 KXG20422 AT1G13600.1 16709202
AT2G04038.1 KXG25724 AT1G13600.1 16709202
AT3G30530.1 EER96905 AT1G13600.1 16709202
AT3G30530.1 EES06428 AT1G13600.1 16709202
AT3G30530.1 EES07324 AT1G13600.1 16709202
AT3G30530.1 KXG19789 AT1G13600.1 16709202
AT3G30530.1 KXG20422 AT1G13600.1 16709202
AT3G30530.1 KXG25724 AT1G13600.1 16709202
AT3G30530.1 EER96530 AT1G75390.1 16709202
AT3G30530.1 EES14897 AT1G75390.1 16709202
AT3G30530.1 EES01631 AT2G41090.1 17360592
AT3G30530.1 EES09201 AT2G41090.1 17360592
AT3G30530.1 EES16322 AT2G41090.1 17360592
AT3G30530.1 OQU78227 AT2G41090.1 17360592
AT3G30530.1 EER96905 AT3G30530.1 16709202
AT3G30530.1 EES06428 AT3G30530.1 16709202
AT3G30530.1 EES07324 AT3G30530.1 16709202
AT3G30530.1 KXG19789 AT3G30530.1 16709202
AT3G30530.1 KXG20422 AT3G30530.1 16709202
AT3G30530.1 KXG25724 AT3G30530.1 16709202
AT5G15830.1 EES01631 AT2G41090.1 17360592
AT5G15830.1 EES09201 AT2G41090.1 17360592
AT5G15830.1 EES16322 AT2G41090.1 17360592
AT5G15830.1 OQU78227 AT2G41090.1 17360592
AT5G15830.1 EES01631 AT2G41100.1 17360592
AT5G15830.1 EES09201 AT2G41100.1 17360592
AT5G15830.1 EES16322 AT2G41100.1 17360592
AT5G15830.1 OQU78227 AT2G41100.1 17360592
AT5G15830.1 KXG37587 AT4G14640.1 17360592
AT5G15830.1 KXG37588 AT4G14640.1 17360592
AT5G15830.1 EES01631 AT5G21274.1 17360592
AT5G15830.1 EES09201 AT5G21274.1 17360592
AT5G15830.1 EES16322 AT5G21274.1 17360592
AT5G15830.1 OQU78227 AT5G21274.1 17360592
AT5G38800.1 EES01631 AT2G41090.1 17360592
AT5G38800.1 EES09201 AT2G41090.1 17360592
AT5G38800.1 EES16322 AT2G41090.1 17360592
AT5G38800.1 OQU78227 AT2G41090.1 17360592
AT5G38800.1 EES01631 AT2G41100.1 17360592
AT5G38800.1 EES09201 AT2G41100.1 17360592
AT5G38800.1 EES16322 AT2G41100.1 17360592
AT5G38800.1 OQU78227 AT2G41100.1 17360592
AT5G38800.1 KXG37587 AT4G14640.1 17360592
AT5G38800.1 KXG37588 AT4G14640.1 17360592
AT5G38800.1 EES01631 AT5G21274.1 17360592
AT5G38800.1 EES09201 AT5G21274.1 17360592
AT5G38800.1 EES16322 AT5G21274.1 17360592
AT5G38800.1 OQU78227 AT5G21274.1 17360592
AT5G38800.1 EER96905 AT5G38800.1 17719007
AT5G38800.1 EES06428 AT5G38800.1 17719007
AT5G38800.1 EES07324 AT5G38800.1 17719007
AT5G38800.1 KXG19789 AT5G38800.1 17719007
AT5G38800.1 KXG20422 AT5G38800.1 17719007
AT5G38800.1 KXG25724 AT5G38800.1 17719007
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026523.1-P Field mustard nucleus 18.09 38.2
Zm00001d037360_P001 Maize nucleus 39.36 37.37
TraesCS7D01G213200.1 Wheat nucleus 36.17 36.96
TraesCS7A01G211500.1 Wheat nucleus 36.17 36.76
TraesCS7B01G118500.1 Wheat nucleus 35.64 36.41
HORVU7Hr1G043080.1 Barley nucleus 36.17 35.05
GSMUA_Achr9P14690_001 Banana nucleus 27.13 32.69
EES07324 Sorghum nucleus 29.26 32.54
GSMUA_Achr5P05350_001 Banana nucleus 27.13 31.1
CDY45843 Canola nucleus 19.15 30.0
Bra038341.1-P Field mustard nucleus 19.15 30.0
GSMUA_Achr8P23510_001 Banana nucleus 25.53 29.81
EER96905 Sorghum nucleus 29.26 29.57
CDX81569 Canola nucleus 18.62 29.17
GSMUA_Achr6P36230_001 Banana nucleus 26.6 28.57
EES06428 Sorghum nucleus 26.06 27.68
Bra025144.1-P Field mustard nucleus 25.0 27.65
CDY48072 Canola nucleus 25.0 27.65
KXG25724 Sorghum nucleus 33.51 27.27
CDY71548 Canola nucleus 24.47 27.06
Solyc02g089420.1.1 Tomato nucleus 25.53 26.67
AT3G30530.1 Thale cress nucleus 24.47 26.59
CDY46496 Canola nucleus 25.0 26.26
CDX99780 Canola nucleus 25.0 26.26
PGSC0003DMT400003516 Potato nucleus 25.0 26.11
Solyc03g046440.1.1 Tomato nucleus 23.94 26.01
Bra029353.1-P Field mustard mitochondrion, nucleus 14.36 25.96
CDY16099 Canola nucleus 22.34 25.77
CDY33124 Canola nucleus 23.94 25.57
CDY04169 Canola nucleus 23.94 25.57
Bra017359.1-P Field mustard nucleus 23.4 25.29
VIT_01s0010g00930.t01 Wine grape nucleus 26.06 25.13
KRH71054 Soybean nucleus 26.6 25.13
CDX85297 Canola nucleus 22.87 25.0
AT2G04038.1 Thale cress nucleus 21.81 24.7
Bra025418.1-P Field mustard nucleus 22.34 24.42
AT1G68880.1 Thale cress nucleus 17.55 23.91
CDY66911 Canola nucleus 21.81 23.84
VIT_14s0083g00700.t01 Wine grape nucleus 25.0 23.74
KRH75199 Soybean nucleus 25.0 23.74
AT5G38800.1 Thale cress nucleus 20.74 23.64
Bra023540.1-P Field mustard nucleus 23.4 23.4
CDX85530 Canola nucleus 23.4 23.4
CDY35775 Canola nucleus 21.28 23.39
PGSC0003DMT400019465 Potato nucleus 23.94 23.2
Bra020735.1-P Field mustard nucleus 20.74 22.81
KRH45160 Soybean nucleus 23.4 22.8
KRH01443 Soybean nucleus 23.4 22.56
KXG20422 Sorghum nucleus 23.4 22.22
CDX90970 Canola nucleus 22.87 22.16
CDX70656 Canola nucleus 22.34 22.11
Bra006324.1-P Field mustard nucleus 21.28 22.1
Bra026895.1-P Field mustard nucleus 22.87 22.05
Bra026896.1-P Field mustard nucleus 22.87 22.05
AT1G13600.1 Thale cress nucleus 22.87 21.94
CDX70639 Canola nucleus 22.34 21.88
CDY26467 Canola nucleus 21.28 21.86
CDX69495 Canola nucleus 21.28 21.86
Bra019715.1-P Field mustard nucleus 22.34 21.76
KRH18312 Soybean nucleus 24.47 21.5
Bra008670.1-P Field mustard nucleus 20.74 21.31
CDX78655 Canola nucleus 21.81 21.24
CDX98108 Canola nucleus 22.34 21.21
CDY37559 Canola nucleus 22.34 21.21
CDY45336 Canola nucleus 22.34 21.21
PGSC0003DMT400004821 Potato nucleus 21.81 21.13
AT5G15830.1 Thale cress nucleus 20.74 20.97
Solyc04g005170.1.1 Tomato nucleus 21.28 20.94
Bra013005.1-P Field mustard nucleus 20.21 20.88
CDY02193 Canola nucleus 20.21 20.77
CDY51629 Canola nucleus 20.74 20.63
Bra005971.1-P Field mustard nucleus 17.55 20.62
CDX78324 Canola nucleus 18.62 20.59
KRG93749 Soybean nucleus 23.94 20.45
AT5G08141.1 Thale cress nucleus 14.89 20.44
CDY42835 Canola nucleus 19.15 20.34
CDY40812 Canola nucleus 19.15 20.34
CDY66792 Canola nucleus 17.55 20.12
KRH63157 Soybean nucleus 15.96 17.96
AT5G60830.1 Thale cress nucleus 19.68 17.96
Bra035957.1-P Field mustard nucleus 17.55 17.93
KRH56749 Soybean nucleus 19.68 17.29
CDY16837 Canola nucleus 19.68 16.74
KRH03190 Soybean cytosol, mitochondrion 8.51 15.38
CDX87188 Canola nucleus 17.55 15.14
CDX70640 Canola nucleus 12.77 15.09
CDX70638 Canola nucleus 12.77 14.81
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1UniProt:A0A194YII9ncoils:CoilGO:GO:0003674GO:GO:0003700
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR004827EnsemblPlants:KXG19789ProteinID:KXG19789ProteinID:KXG19789.1PFAM:PF00170ScanProsite:PS00036
PFscan:PS50217PANTHER:PTHR22952PANTHER:PTHR22952:SF363SMART:SM00338EnsemblPlantsGene:SORBI_3010G116200SUPFAM:SSF57959
UniParc:UPI0007F1EB44InterPro:bZIPSEG:seg:::
Description
hypothetical protein
Coordinates
chr10:-:12621641..12623901
Molecular Weight (calculated)
22077.0 Da
IEP (calculated)
9.216
GRAVY (calculated)
-0.922
Length
188 amino acids
Sequence
(BLAST)
001: MHPSEVASVF LPYLPPAATA SICFGIVPHY HTPADDDLHR LLFPCNDDSD LLTLPYTVAS FEYAGGQPLL EHHHHHHHHH HHAVNDKDEG GDDRRLLQHR
101: RQLLAEERRR RRTVSNRESA RRSRVRKRKQ LTQLWEQVVF LRGDNRDLLD RLNRAIRDAD HVLRDNARLS DERAELQRRL HELAGARR
Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
Arabidopsis Description
ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.