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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68131
CDX85297
CDX85411
CDX85891
CDX86233
CDX98108
CDY16099
CDY35775
CDY37559
CDY39029
CDY45336
CDY49605
CDY52079
CDY66911

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G30530.1 CDX98108 AT1G13600.1 16709202
AT3G30530.1 CDY16099 AT1G13600.1 16709202
AT3G30530.1 CDY37559 AT1G13600.1 16709202
AT3G30530.1 CDY45336 AT1G13600.1 16709202
AT3G30530.1 CDX68131 AT1G75390.1 16709202
AT3G30530.1 CDX85891 AT1G75390.1 16709202
AT3G30530.1 CDY39029 AT1G75390.1 16709202
AT3G30530.1 CDY52079 AT1G75390.1 16709202
AT3G30530.1 CDX85297 AT3G30530.1 16709202
AT3G30530.1 CDY35775 AT3G30530.1 16709202
AT3G30530.1 CDY66911 AT3G30530.1 16709202
AT3G30530.1 CDX85411 AT5G49450.1 16709202
AT3G30530.1 CDX86233 AT5G49450.1 16709202
AT3G30530.1 CDY49605 AT5G49450.1 16709202
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35775 Canola nucleus 84.88 85.38
Bra025418.1-P Field mustard nucleus 78.49 78.49
AT3G30530.1 Thale cress nucleus 69.19 68.79
CDX85297 Canola nucleus 68.6 68.6
Solyc02g089420.1.1 Tomato nucleus 51.74 49.44
PGSC0003DMT400003516 Potato nucleus 51.74 49.44
KRH45160 Soybean nucleus 48.84 43.52
CDY16099 Canola nucleus 40.7 42.94
CDX69495 Canola nucleus 45.35 42.62
CDY26467 Canola nucleus 45.35 42.62
KRH01443 Soybean nucleus 47.67 42.05
VIT_14s0083g00700.t01 Wine grape nucleus 48.26 41.92
Solyc03g046440.1.1 Tomato nucleus 41.86 41.62
CDY71548 Canola nucleus 40.7 41.18
KRH18312 Soybean nucleus 51.16 41.12
CDX70656 Canola nucleus 45.35 41.05
CDX85530 Canola nucleus 44.77 40.96
CDY48072 Canola nucleus 40.12 40.59
CDX78655 Canola nucleus 44.77 39.9
CDX70639 Canola nucleus 44.19 39.58
CDX90970 Canola nucleus 44.19 39.18
KRG93749 Soybean nucleus 50.0 39.09
CDY04169 Canola nucleus 39.53 38.64
CDY33124 Canola nucleus 39.53 38.64
CDY45843 Canola nucleus 26.74 38.33
CDX99780 Canola nucleus 38.95 37.43
CDY37559 Canola nucleus 43.02 37.37
CDY45336 Canola nucleus 43.02 37.37
CDX98108 Canola nucleus 43.02 37.37
CDY46496 Canola nucleus 38.37 36.87
GSMUA_Achr9P14690_001 Banana nucleus 32.56 35.9
CDX81569 Canola nucleus 25.0 35.83
Zm00001d052807_P001 Maize nucleus 29.07 35.46
Os02t0728001-00 Rice nucleus 32.56 33.14
EES07324 Sorghum nucleus 31.98 32.54
GSMUA_Achr8P23510_001 Banana nucleus 30.23 32.3
CDY42835 Canola nucleus 33.14 32.2
GSMUA_Achr6P36230_001 Banana nucleus 32.56 32.0
CDY40812 Canola nucleus 32.56 31.64
Zm00001d017911_P001 Maize nucleus 31.98 31.25
Os09t0474000-01 Rice nucleus 30.81 30.64
Zm00001d051739_P001 Maize nucleus 26.16 30.0
GSMUA_Achr5P05350_001 Banana nucleus 27.91 29.27
HORVU5Hr1G070540.1 Barley nucleus 32.56 29.17
Zm00001d015664_P001 Maize nucleus 28.49 29.17
EES06428 Sorghum nucleus 29.65 28.81
TraesCS6B01G198700.1 Wheat nucleus 29.07 28.25
TraesCS7B01G293900.1 Wheat nucleus 27.33 28.14
Zm00001d005962_P001 Maize nucleus, plastid 26.74 28.05
Os02t0191600-00 Rice nucleus 31.98 27.64
TraesCS5A01G250400.1 Wheat nucleus 31.4 27.55
EER96905 Sorghum nucleus 29.65 27.42
TraesCS6D01G160200.1 Wheat nucleus 27.91 27.27
TraesCS7D01G213200.1 Wheat nucleus 29.07 27.17
TraesCS6A01G170600.1 Wheat nucleus 27.91 27.12
TraesCS7A01G211500.1 Wheat nucleus 29.07 27.03
CDY51629 Canola nucleus 29.65 26.98
TraesCS7B01G293700.1 Wheat nucleus 26.16 26.95
TraesCS7B01G118500.1 Wheat nucleus 28.49 26.63
CDX70638 Canola nucleus 25.0 26.54
TraesCS5D01G258000.1 Wheat nucleus 29.65 26.42
CDY02193 Canola nucleus 27.91 26.23
TraesCS5B01G248400.1 Wheat nucleus 29.07 25.91
Zm00001d020823_P001 Maize nucleus 29.07 25.64
HORVU7Hr1G043080.1 Barley nucleus 28.49 25.26
CDX70640 Canola nucleus 23.26 25.16
TraesCS6D01G270000.1 Wheat nucleus 29.07 25.13
TraesCS7A01G181100.1 Wheat nucleus 31.4 24.88
HORVU1Hr1G013620.1 Barley nucleus 26.16 24.73
TraesCS6B01G318700.1 Wheat nucleus 29.65 24.64
TraesCS7D01G182900.1 Wheat nucleus 31.4 24.43
CDY66792 Canola nucleus 23.26 24.39
HORVU6Hr1G072490.1 Barley nucleus 27.33 23.98
Zm00001d053703_P001 Maize nucleus 24.42 23.86
Zm00001d031272_P001 Maize nucleus 27.91 23.76
HORVU2Hr1G098530.1 Barley nucleus 24.42 23.73
Os08t0487100-01 Rice nucleus 31.4 23.48
HORVU7Hr1G037230.2 Barley nucleus 30.23 23.42
KXG25724 Sorghum nucleus 31.4 23.38
TraesCS7B01G086100.1 Wheat nucleus 30.23 23.32
TraesCS6A01G288900.1 Wheat nucleus 26.74 22.33
CDX87188 Canola nucleus 27.91 22.02
KXG19789 Sorghum nucleus 23.84 21.81
CDX78324 Canola nucleus 21.51 21.76
HORVU6Hr1G034810.1 Barley nucleus 26.74 21.5
CDY16837 Canola nucleus 26.16 20.36
Zm00001d046664_P001 Maize nucleus 22.09 20.32
Zm00001d037360_P001 Maize nucleus 23.26 20.2
KXG20422 Sorghum nucleus 22.67 19.7
TraesCS7A01G391800.1 Wheat mitochondrion 22.09 15.7
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078JMC7UniProt:A0A078JMC7EnsemblPlants:CDY66911ProteinID:CDY66911
ProteinID:CDY66911.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00056834001InterPro:IPR004827PFAM:PF00170ScanProsite:PS00036PFscan:PS50217
PANTHER:PTHR22952PANTHER:PTHR22952:SF349SMART:SM00338SUPFAM:SSF57959UniParc:UPI0004EEBEA3InterPro:bZIP
SEG:seg:::::
Description
BnaA06g39730DBnaA06g39730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMC7]
Coordinates
chrLK035574:-:11061..11579
Molecular Weight (calculated)
20130.4 Da
IEP (calculated)
5.666
GRAVY (calculated)
-1.008
Length
172 amino acids
Sequence
(BLAST)
001: MQPQTDVFSL QNYLNSSIPS PYPSHFQISS PFPINGQNPN SFYGFQNATN NPQSMSLSSN NSTSDEAEEQ QTDKNIINER KQRRMISNRE SARRSRMRKQ
101: RHLDELWSQV MWLRIENHQL LDKLNNLSES HEKVLQENAQ LKEETSELKQ VISDMQIQSP FSCFRDDIIP IE
Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
Arabidopsis Description
ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.