CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67893
CDX69072
CDX72490
CDX75445
CDX76292
CDX76636
CDX85297
CDX85411
CDX86233
CDX98108
CDX99780
CDY04169
CDY11421
CDY16099
CDY17470
CDY25111
CDY31528
CDY33124
CDY35775
CDY37559
CDY45319
CDY45336
CDY46496
CDY48072
CDY49605
CDY66911
CDY71548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13600.1	CDX98108	AT1G13600.1	16709202
AT1G13600.1	CDY16099	AT1G13600.1	16709202
AT1G13600.1	CDY37559	AT1G13600.1	16709202
AT1G13600.1	CDY45336	AT1G13600.1	16709202
AT1G13600.1	CDX99780	AT2G04038.1	16709202
AT1G13600.1	CDY04169	AT2G04038.1	16709202
AT1G13600.1	CDY33124	AT2G04038.1	16709202
AT1G13600.1	CDY46496	AT2G04038.1	16709202
AT1G13600.1	CDY48072	AT2G04038.1	16709202
AT1G13600.1	CDY71548	AT2G04038.1	16709202
AT1G13600.1	CDX85297	AT3G30530.1	16709202
AT1G13600.1	CDY35775	AT3G30530.1	16709202
AT1G13600.1	CDY66911	AT3G30530.1	16709202
AT1G13600.1	CDX67893	AT3G62420.1	16709202
AT1G13600.1	CDX76636	AT3G62420.1	16709202
AT1G13600.1	CDY11421	AT3G62420.1	16709202
AT1G13600.1	CDY25111	AT3G62420.1	16709202
AT1G13600.1	CDX69072	AT4G34590.1	16709202
AT1G13600.1	CDX72490	AT4G34590.1	16709202
AT1G13600.1	CDX75445	AT4G34590.1	16709202
AT1G13600.1	CDX76292	AT4G34590.1	16709202
AT1G13600.1	CDY17470	AT4G34590.1	16709202
AT1G13600.1	CDY31528	AT4G34590.1	16709202
AT1G13600.1	CDY45319	AT4G34590.1	16709202
AT1G13600.1	CDX85411	AT5G49450.1	16709202
AT1G13600.1	CDX86233	AT5G49450.1	16709202
AT1G13600.1	CDY49605	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019715.1-P	Field mustard	nucleus	97.47	100.0
CDY37559	Canola	nucleus	100.0	100.0
CDY45336	Canola	nucleus	97.47	97.47
AT1G13600.1	Thale cress	nucleus	83.33	84.18
CDY16099	Canola	nucleus	56.57	68.71
CDY46496	Canola	nucleus	55.05	60.89
CDY48072	Canola	nucleus	51.01	59.41
CDY71548	Canola	nucleus	51.01	59.41
CDX99780	Canola	nucleus	53.54	59.22
CDY04169	Canola	nucleus	48.99	55.11
CDY33124	Canola	nucleus	48.99	55.11
CDX85297	Canola	nucleus	38.89	44.77
CDY35775	Canola	nucleus	37.88	43.86
CDY66911	Canola	nucleus	37.37	43.02
CDY45843	Canola	nucleus	24.75	40.83
CDX81569	Canola	nucleus	24.24	40.0
PGSC0003DMT400019465	Potato	nucleus	38.89	39.69
Solyc04g005170.1.1	Tomato	nucleus	37.37	38.74
VIT_01s0010g00930.t01	Wine grape	nucleus	37.88	38.46
KRH75199	Soybean	nucleus	37.88	37.88
PGSC0003DMT400004821	Potato	nucleus	36.87	37.63
CDX69495	Canola	nucleus	33.84	36.61
CDX70656	Canola	nucleus	34.85	36.32
KRH71054	Soybean	nucleus	36.36	36.18
CDX85530	Canola	nucleus	34.34	36.17
Zm00001d052807_P001	Maize	nucleus	25.76	36.17
CDX78655	Canola	nucleus	34.34	35.23
CDY26467	Canola	nucleus	32.32	34.97
CDX90970	Canola	nucleus	33.84	34.54
CDX70639	Canola	nucleus	33.33	34.38
GSMUA_Achr5P05350_001	Banana	nucleus	25.76	31.1
GSMUA_Achr9P14690_001	Banana	nucleus	24.24	30.77
Os02t0191600-00	Rice	nucleus	29.8	29.65
Zm00001d015664_P001	Maize	nucleus	24.75	29.17
GSMUA_Achr6P36230_001	Banana	nucleus	24.75	28.0
GSMUA_Achr8P23510_001	Banana	nucleus	22.22	27.33
TraesCS6D01G160200.1	Wheat	nucleus	24.24	27.27
Os09t0474000-01	Rice	nucleus	23.74	27.17
EES06428	Sorghum	nucleus	24.24	27.12
TraesCS7B01G293900.1	Wheat	nucleus	22.73	26.95
Zm00001d005962_P001	Maize	nucleus, plastid	22.22	26.83
EES07324	Sorghum	nucleus	22.73	26.63
Os02t0728001-00	Rice	nucleus	22.73	26.63
TraesCS6B01G198700.1	Wheat	nucleus	23.74	26.55
Zm00001d017911_P001	Maize	nucleus	23.23	26.14
TraesCS6A01G170600.1	Wheat	nucleus	23.23	25.99
EER96905	Sorghum	nucleus	23.74	25.27
TraesCS7B01G293700.1	Wheat	nucleus	21.21	25.15
Zm00001d020823_P001	Maize	nucleus	24.75	25.13
HORVU5Hr1G070540.1	Barley	nucleus	24.24	25.0
TraesCS5A01G250400.1	Wheat	nucleus	24.75	25.0
TraesCS7D01G213200.1	Wheat	nucleus	23.23	25.0
CDY51629	Canola	nucleus	23.74	24.87
HORVU1Hr1G013620.1	Barley	nucleus	22.73	24.73
Zm00001d051739_P001	Maize	nucleus	18.69	24.67
TraesCS7B01G118500.1	Wheat	nucleus	22.73	24.46
Zm00001d053703_P001	Maize	nucleus	21.72	24.43
CDY66792	Canola	nucleus	20.2	24.39
CDY02193	Canola	nucleus	22.22	24.04
TraesCS7A01G211500.1	Wheat	nucleus	22.22	23.78
Zm00001d031272_P001	Maize	nucleus	24.24	23.76
CDY40812	Canola	nucleus	21.21	23.73
CDY42835	Canola	nucleus	21.21	23.73
HORVU2Hr1G098530.1	Barley	nucleus	21.21	23.73
TraesCS6D01G270000.1	Wheat	nucleus	23.74	23.62
TraesCS7A01G181100.1	Wheat	nucleus	25.76	23.5
HORVU6Hr1G072490.1	Barley	nucleus	23.23	23.47
TraesCS5B01G248400.1	Wheat	nucleus	22.73	23.32
HORVU7Hr1G043080.1	Barley	nucleus	22.73	23.2
TraesCS7D01G182900.1	Wheat	nucleus	25.76	23.08
CDX70638	Canola	nucleus	18.69	22.84
TraesCS6A01G288900.1	Wheat	nucleus	23.74	22.82
Zm00001d046664_P001	Maize	nucleus	21.21	22.46
CDX78324	Canola	nucleus	19.19	22.35
KXG19789	Sorghum	nucleus	21.21	22.34
TraesCS6B01G318700.1	Wheat	nucleus	23.23	22.22
CDX87188	Canola	nucleus	24.24	22.02
CDX70640	Canola	nucleus	17.68	22.01
HORVU6Hr1G034810.1	Barley	nucleus	23.74	21.96
TraesCS5D01G258000.1	Wheat	nucleus	21.21	21.76
KXG25724	Sorghum	nucleus	25.25	21.64
Os08t0487100-01	Rice	nucleus	24.24	20.87
KXG20422	Sorghum	nucleus	20.71	20.71
TraesCS7B01G086100.1	Wheat	nucleus	23.23	20.63
HORVU7Hr1G037230.2	Barley	nucleus	22.73	20.27
Zm00001d037360_P001	Maize	nucleus	20.2	20.2
CDY16837	Canola	nucleus	21.72	19.46
TraesCS7A01G391800.1	Wheat	mitochondrion	22.73	18.59

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078EFI1	UniProt:A0A078EFI1	EnsemblPlants:CDX98108	ProteinID:CDX98108
ProteinID:CDX98108.1	ProteinID:CDY37559.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00105493001	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF133	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EDE1C9
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaA06g08590DBnaA02g20110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EFI1]

Coordinates

chrLK031902:-:1088483..1089079

Molecular Weight (calculated)

23117.6 Da

IEP (calculated)

5.374

GRAVY (calculated)

-1.101

Length

198 amino acids

Sequence
(BLAST)

001: MNTIPAELTG YFQYVSPEIY NNQTPITESE YFKMPSSPTS ASSFYYINDL MTNNNNNYSS SSNVQDPVTS NNSTSDDDHR QSMVIDERKQ RRMISNRESA
101: RRSRMRKQRH LDELWSQVIR LRTDNHCLID KLNRVSESHQ LALKENAKLK EETSNLKQLI SEIKSNNEDD NNFLRELEDS ISNSRSDSNQ MGRDFELC

Best Arabidopsis Sequence Match ( AT1G13600.1 )
(BLAST)

001: MNTIPAELTG YFHYLPPDKY NNQTPIMESE YFNMPSSPTS CSSFYHLNGL INNNNYSSSS NGQDLMTSNN STSDEDHQQS MVIDERKQRR MISNRESARR
101: SRMRKQRHLD ELWSQVIRLR TDNHCLMDKL NRVSESHELA LKENAKLKEE TSDLRQLISE IKSHNEDDNS FLRELEDSIS NSRSDSNQSG RDFELC

Arabidopsis Description

AtbZIP58BZIP58 [Source:UniProtKB/TrEMBL;Acc:A0A178WP44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.