Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67893
CDX68131
CDX69072
CDX72490
CDX75445
CDX76292
CDX76636
CDX78493
CDX80469
CDX85297
CDX85411
CDX85684
CDX85891
CDX86233
CDX88132
CDX91158
CDX97209
CDY05397
CDY05458
CDY11421
CDY17470
CDY20909
CDY25111
CDY29220
CDY30327
CDY31528
CDY35775
CDY39029
CDY45319
CDY46312
CDY49605
CDY52079
CDY53277
CDY53970
CDY55832
CDY66911

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75390.1 CDX68131 AT1G75390.1 16709202
AT1G75390.1 CDX85891 AT1G75390.1 16709202
AT1G75390.1 CDY39029 AT1G75390.1 16709202
AT1G75390.1 CDY52079 AT1G75390.1 16709202
AT1G75390.1 CDY20909 AT2G18160.1 16709202
AT1G75390.1 CDY29220 AT2G18160.1 16709202
AT1G75390.1 CDY30327 AT2G18160.1 16709202
AT1G75390.1 CDY46312 AT2G18160.1 16709202
AT1G75390.1 CDY53277 AT2G18160.1 16709202
AT1G75390.1 CDX85297 AT3G30530.1 16709202
AT1G75390.1 CDY35775 AT3G30530.1 16709202
AT1G75390.1 CDY66911 AT3G30530.1 16709202
AT1G75390.1 CDY55832 AT3G54620.1 16709202
AT1G75390.1 CDX67893 AT3G62420.1 16709202
AT1G75390.1 CDX76636 AT3G62420.1 16709202
AT1G75390.1 CDY11421 AT3G62420.1 16709202
AT1G75390.1 CDY25111 AT3G62420.1 16709202
AT1G75390.1 CDX67893 AT3G62420.1 16810321
AT1G75390.1 CDX76636 AT3G62420.1 16810321
AT1G75390.1 CDY11421 AT3G62420.1 16810321
AT1G75390.1 CDY25111 AT3G62420.1 16810321
AT1G75390.1 CDX69072 AT4G34590.1 16709202
AT1G75390.1 CDX72490 AT4G34590.1 16709202
AT1G75390.1 CDX75445 AT4G34590.1 16709202
AT1G75390.1 CDX76292 AT4G34590.1 16709202
AT1G75390.1 CDY17470 AT4G34590.1 16709202
AT1G75390.1 CDY31528 AT4G34590.1 16709202
AT1G75390.1 CDY45319 AT4G34590.1 16709202
AT1G75390.1 CDX78493 AT5G12870.1 21245844
AT1G75390.1 CDX85684 AT5G12870.1 21245844
AT1G75390.1 CDX91158 AT5G12870.1 21245844
AT1G75390.1 CDX97209 AT5G12870.1 21245844
AT1G75390.1 CDY53970 AT5G12870.1 21245844
AT1G75390.1 CDX80469 AT5G24800.1 16709202
AT1G75390.1 CDX88132 AT5G24800.1 16709202
AT1G75390.1 CDY05397 AT5G24800.1 16709202
AT1G75390.1 CDY05458 AT5G24800.1 16709202
AT1G75390.1 CDX85411 AT5G49450.1 16709202
AT1G75390.1 CDX86233 AT5G49450.1 16709202
AT1G75390.1 CDY49605 AT5G49450.1 16709202
AT1G75390.1 CDX85411 AT5G49450.1 21245844
AT1G75390.1 CDX86233 AT5G49450.1 21245844
AT1G75390.1 CDY49605 AT5G49450.1 21245844
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008192.1-P Field mustard nucleus 98.1 93.94
CDY52079 Canola nucleus 93.67 93.67
AT1G75390.1 Thale cress nucleus 77.85 71.1
CDX85891 Canola nucleus 76.58 68.75
CDX68131 Canola nucleus 75.95 67.04
CDY31528 Canola nucleus 43.04 47.89
CDY17470 Canola nucleus 43.04 47.89
CDX76292 Canola nucleus 43.04 47.89
CDY45319 Canola nucleus 46.2 47.71
CDX75445 Canola nucleus 46.2 47.4
CDX72490 Canola nucleus 45.57 47.06
CDX69072 Canola nucleus 45.57 46.75
CDY29220 Canola nucleus 44.94 45.81
CDY53277 Canola nucleus, plastid 45.57 42.86
CDY30327 Canola nucleus, plastid 45.57 42.86
CDX76636 Canola nucleus 37.97 42.55
CDY11421 Canola nucleus 37.34 41.84
CDX67893 Canola nucleus 35.44 41.79
CDY25111 Canola nucleus 35.44 41.79
CDY20909 Canola nucleus 44.94 41.76
CDY46312 Canola nucleus 43.04 40.48
Os09t0306400-01 Rice nucleus 32.91 33.99
EER96530 Sorghum nucleus 34.18 33.96
HORVU5Hr1G054510.1 Barley nucleus 31.01 31.82
TraesCS5B01G176700.1 Wheat nucleus 30.38 31.37
TraesCS5A01G179000.1 Wheat nucleus 30.38 31.17
TraesCS5D01G183500.1 Wheat nucleus 30.38 31.17
Zm00001d005578_P001 Maize nucleus 32.28 30.0
Zm00001d030577_P001 Maize nucleus 29.11 29.11
EES14897 Sorghum nucleus, plastid 31.65 28.41
Os08t0357300-01 Rice cytosol 14.56 20.35
Zm00001d020025_P001 Maize endoplasmic reticulum, extracellular 12.66 16.53
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078HNT7UniProt:A0A078HNT7EnsemblPlants:CDY39029ProteinID:CDY39029
ProteinID:CDY39029.1GO:GO:0003674GO:GO:0003700GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00067162001InterPro:IPR004827PFAM:PF00170
ScanProsite:PS00036PFscan:PS50217PANTHER:PTHR22952PANTHER:PTHR22952:SF229SMART:SM00338SUPFAM:SSF57959
UniParc:UPI0004EF2419InterPro:bZIPSEG:seg:::
Description
BnaA02g17180DBnaA02g17180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNT7]
Coordinates
chrLK032439:+:3824..4495
Molecular Weight (calculated)
17505.6 Da
IEP (calculated)
5.796
GRAVY (calculated)
-0.549
Length
158 amino acids
Sequence
(BLAST)
001: MNKTEMGSPA SGNCSSGLQN YGSESDERKR KRKESNRESA RRSRMRKQKH LDDLTAQVAY LREENSHIVA GIAVTTQQYV TIEAENSILR AQFLELNQRL
101: DSLNEIVEIA GGFWMETGQG GGVIGFYDGV MNPLNLGFYN QTLMGSASTV PADVFNCC
Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)
001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC
Arabidopsis Description
BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.