Factsheet for GSMUA_Achr4P28530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15640_001
GSMUA_Achr1P23640_001
GSMUA_Achr2P12610_001
GSMUA_Achr4P28530_001
GSMUA_Achr7P07650_001
GSMUA_Achr7P23040_001
GSMUA_Achr8P22330_001
GSMUA_Achr8P29960_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54620.1	GSMUA_Achr7P23040_001	AT3G24650.1	12657652
AT3G54620.1	GSMUA_AchrUn_...	AT3G24650.1	12657652
AT3G54620.1	GSMUA_Achr10P...	AT3G54620.1	16709202
AT3G54620.1	GSMUA_Achr2P12610_001	AT3G54620.1	16709202
AT3G54620.1	GSMUA_Achr4P28530_001	AT3G54620.1	16709202
AT3G54620.1	GSMUA_Achr7P07650_001	AT3G54620.1	16709202
AT3G54620.1	GSMUA_Achr11P...	AT3G62420.1	16709202
AT3G54620.1	GSMUA_Achr11P...	AT3G62420.1	16709202
AT3G54620.1	GSMUA_Achr8P22330_001	AT3G62420.1	16709202
AT3G54620.1	GSMUA_Achr8P29960_001	AT3G62420.1	16709202
AT3G54620.1	GSMUA_Achr11P...	AT3G62420.1	16810321
AT3G54620.1	GSMUA_Achr11P...	AT3G62420.1	16810321
AT3G54620.1	GSMUA_Achr8P22330_001	AT3G62420.1	16810321
AT3G54620.1	GSMUA_Achr8P29960_001	AT3G62420.1	16810321
AT3G54620.1	GSMUA_Achr1P15640_001	AT5G24800.1	16709202
AT3G54620.1	GSMUA_Achr1P23640_001	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	31.13	59.46
Solyc08g022080.2.1	Tomato	mitochondrion, nucleus	19.34	58.16
GSMUA_Achr2P12610_001	Banana	nucleus	50.47	51.94
GSMUA_Achr7P07650_001	Banana	nucleus	25.47	47.58
AT5G28770.2	Thale cress	nucleus	31.84	42.99
Bra010010.1-P	Field mustard	nucleus	31.13	42.04
CDX86210	Canola	nucleus	30.9	41.72
Bra020620.1-P	Field mustard	nucleus	30.42	40.95
CDY05606	Canola	nucleus	30.66	40.75
CDY33887	Canola	nucleus	30.19	40.63
CDY48665	Canola	nucleus	30.42	40.57
Solyc01g097330.2.1	Tomato	nucleus	41.75	38.99
PGSC0003DMT400050096	Potato	nucleus	40.09	37.69
KRG89569	Soybean	nucleus	18.87	37.21
Bra000102.1-P	Field mustard	nucleus	29.95	34.7
CDY14423	Canola	nucleus	30.42	34.68
CDY07692	Canola	nucleus	30.19	34.32
CDX78251	Canola	nucleus	30.9	34.11
CDX73466	Canola	nucleus	30.19	33.86
Bra007083.1-P	Field mustard	nucleus	30.66	33.85
CDY55832	Canola	nucleus	24.76	33.33
AT3G54620.1	Thale cress	nucleus	31.37	33.0
AT4G02640.2	Thale cress	nucleus	29.25	29.74
GSMUA_Achr1P23640_001	Banana	nucleus	17.45	29.48
CDY21903	Canola	nucleus	27.36	29.44
CDY22069	Canola	nucleus	26.65	28.61
Bra036251.1-P	Field mustard	nucleus	26.42	28.43
GSMUA_Achr1P15640_001	Banana	nucleus	17.45	21.45

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.2	InterPro:Basic_leucine-zipper_C	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G28530_001	EnsemblPlants:GSMUA_Achr4P28530_001
EnsemblPlants:GSMUA_Achr4T28530_001	InterPro:IPR004827	UniProt:M0SSW5	PFAM:PF00170	PFAM:PF12498	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF348	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002961B29
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Putative Light-inducible protein CPRF2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28530_001]

Coordinates

chr4:+:26931477..26938777

Molecular Weight (calculated)

45068.4 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.521

Length

424 amino acids

Sequence
(BLAST)

001: MERVFSVDEI GDSFWAASPA PPPGLPLPPG GAAMNRSPSE WYFERFLAEE PTPAPTAASS SPNPNPNPSF HPNPNRNVPP NPSASSSVVG SNFCEGRREL
101: GRVGDDEVVE IKAPIVVAVP PQPSDLPATV DPGHYQTLLK HKLDIACAAV AMSRVHPGSS VQDSASIADS MSPISDVSHL GSQAPVKGNA STVQHKAGGG
201: PGGVPALSIL QNSGTQGRPA TSGSSREQSD DDDEVEGDAE TNDNMDVTDI KRIRRMLSNR ESARRSRRRK QAHLSELEVQ VSQLRIENSS LLKRLTDINQ
301: KYSDAAVDNR ILKADVETLR AKVKMAEETV KRVTGVSPLY PIISDMSNIS LSFAGSPSDA TSDAAVPNAV RGAAAAGRIA GPASLQRIDS LEHLEERMFG
401: GPTSPLQWDT AAWDPDTSLT NNKN

Best Arabidopsis Sequence Match ( AT5G28770.2 )
(BLAST)

001: MEKVFSDEEI SGNHHWSVNG MTSLNRSASE WAFNRFIQES SAAADDGEST TACGVSVSSP PNVPVDSEEY RAFLKSKLNL ACAAVAMKRG TFIKPQDTSG
101: RSDNGGANES EQASLASSKA TPMMSSAITS GSELSGDEEE ADGETNMNPT NVKRVKRMLS NRESARRSRR RKQAHLSELE TQVSQLRVEN SKLMKGLTDV
201: TQTFNDASVE NRVLKANIET LRAKVKMAEE TVKRLTGFNP MFHNMPQIVS TVSLPSETSN SPDTTSSQVT TPEIISSGNK GKALIGCKMN RTASMRRVES
301: LEHLQKRIRS VGDQ

Arabidopsis Description

BZIP63Basic leucine zipper 63 [Source:UniProtKB/Swiss-Prot;Acc:B9DGI8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.