Factsheet for PGSC0003DMT400026417

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT4G18650.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g073580.1.1	Tomato	cytosol	93.24	94.52
Solyc02g076640.1.1	Tomato	cytosol	33.33	85.06
AT4G18650.1	Thale cress	cytosol	52.25	50.0
Bra013337.1-P	Field mustard	cytosol	45.05	49.26
CDX99446	Canola	cytosol	50.9	47.28
KRH21250	Soybean	cytosol	54.05	47.24
CDX78882	Canola	cytosol	50.45	46.86
KRH11036	Soybean	plastid	51.8	39.66
PGSC0003DMT400018207	Potato	nucleus	22.52	28.9
PGSC0003DMT400059950	Potato	cytosol	33.33	26.06
PGSC0003DMT400012745	Potato	cytosol	27.48	25.85
PGSC0003DMT400011369	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.93	25.83
PGSC0003DMT400028833	Potato	cytosol	28.38	25.4
PGSC0003DMT400039657	Potato	cytosol	25.23	25.0
PGSC0003DMT400088909	Potato	nucleus	26.13	23.77
Zm00001d040624_P001	Maize	cytosol	23.87	23.66
PGSC0003DMT400068759	Potato	cytosol	24.77	23.5
KXG32375	Sorghum	cytosol	24.32	23.48
PGSC0003DMT400073292	Potato	cytosol	25.68	22.8
PGSC0003DMT400073296	Potato	nucleus	25.23	22.31
Zm00001d009087_P001	Maize	cytosol	22.52	22.22
PGSC0003DMT400073133	Potato	nucleus	27.93	22.14
TraesCS2B01G512700.1	Wheat	cytosol	23.42	21.67
PGSC0003DMT400028832	Potato	cytosol	10.81	21.62
TraesCS2A01G486100.1	Wheat	mitochondrion	23.42	20.88
Os01t0306400-01	Rice	nucleus	23.87	20.23
HORVU2Hr1G108600.1	Barley	cytosol	11.26	19.53

Protein Annotations

MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:M1AN50	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400010193	PGSC:PGSC0003DMG400010193
EnsemblPlants:PGSC0003DMT400026417	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF143	InterPro:TGA_domain	UniParc:UPI00029692F8
SEG:seg	:	:	:	:	:

Description

Transcription factor HBP-1b [Source:PGSC_GENE;Acc:PGSC0003DMG400010193]

Coordinates

chr2:+:32008287..32009130

Molecular Weight (calculated)

25812.6 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.327

Length

222 amino acids

Sequence
(BLAST)

001: MTSQVGENFR KYFENWMIQL EELLKQLVIV PRETSYVNDH ESLVSKMTTH HKDYYTAKWA AAHEDILAFF TPMWLSPLEI VYSWITGWKP SMAFRLVGGG
101: AFSDEQLKNI DGLRVKIRGE EEKVEREMER QQVAIGDRKM VELARIKNSD NNDELVELAL KGLRMSLERV MKMADCVRLK TLKGLLEILS PIQSVDFLAA
201: ISTIQIQMRK RGRKRMNVAK FN

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.