CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18650.1	CDX73678	AT3G51920.1	17360592
AT4G18650.1	CDX95314	AT3G51920.1	17360592
AT4G18650.1	CDY23174	AT3G51920.1	17360592
AT4G18650.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78882	Canola	cytosol	99.16	99.16
Bra013337.1-P	Field mustard	cytosol	84.1	99.01
AT4G18650.1	Thale cress	cytosol	80.33	82.76
Solyc02g073580.1.1	Tomato	cytosol	46.86	51.14
PGSC0003DMT400026417	Potato	cytosol	47.28	50.9
Solyc02g076640.1.1	Tomato	cytosol	17.99	49.43
KRH21250	Soybean	cytosol	51.46	48.43
KRH11036	Soybean	plastid	51.05	42.07
Zm00001d040624_P001	Maize	cytosol	28.87	30.8
KXG32375	Sorghum	cytosol	28.03	29.13
Zm00001d009087_P001	Maize	cytosol	26.78	28.44
TraesCS2B01G512700.1	Wheat	cytosol	26.78	26.67
CDX97614	Canola	nucleus	25.94	26.16
TraesCS2A01G486100.1	Wheat	mitochondrion	27.2	26.1
CDX93460	Canola	cytosol, plastid	25.1	26.09
CDX94928	Canola	plastid	25.1	26.09
CDY70896	Canola	nucleus	25.1	25.32
CDX98510	Canola	nucleus	25.1	25.32
Os01t0306400-01	Rice	nucleus	27.2	24.81
CDY22613	Canola	cytosol, plastid	23.01	23.71
HORVU2Hr1G108600.1	Barley	cytosol	12.13	22.66
CDY61468	Canola	cytosol	24.27	20.71
CDX76507	Canola	nucleus	20.08	20.08
CDY58051	Canola	nucleus	23.43	20.0
CDY70293	Canola	cytosol	20.5	19.76
CDY52216	Canola	cytosol	22.59	19.29
CDY23102	Canola	nucleus	22.18	18.93
CDY66844	Canola	cytosol	22.18	18.6
CDX78883	Canola	cytosol, nucleus, plastid	9.62	18.4
CDX99444	Canola	cytosol, nucleus, plastid	9.62	17.56
CDY34053	Canola	cytosol	23.01	16.87

Protein Annotations

MapMan:15.5.4.5	GO:A0A078EE91	EnsemblPlants:CDX99446	ProteinID:CDX99446	ProteinID:CDX99446.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00107783001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF143	InterPro:TGA_domain	UniParc:UPI0004EBFDFA
SEG:seg	:	:	:	:	:

Description

BnaC01g11060D

Coordinates

chrLK031910:+:708017..709701

Molecular Weight (calculated)

27683.7 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.194

Length

239 amino acids

Sequence
(BLAST)

001: MRNRVEEKFL EFYESWIFQL EQYLHQLLIA HNNINTMSEI ELRGLISKLT AHHKAYYTAK WAAIGEDILA FFGPVWLNPL EKSCFWLTGW KPSTAFRMLD
101: RLRKSWRPTV VLVEAQVRRL EELRVKTRFD EERIETEMER YQVAMADRKM VELARLGCRV GGVEGESTVL VEAAVKGLAT RLEKMVKAAD CVRLKTLKGI
201: LDVLAPPQCV EFLAAAAAFQ VQLRRWGNER HNVTHSYGS

Best Arabidopsis Sequence Match ( AT4G18650.1 )
(BLAST)

001: MSKMRNLVEE KFLEFYESWV IQLELYLHQL LIAHNNNTMS ETELRHLISK LTTHHKAYYT AKWAAIREDV LAFFGSVWLN PLENACSWLT GWKPSMVFRM
101: VDRLRKSRVV LVEAQVKKLE ELRVKTKFDE QKIEREMERY QVAMADRKMV ELARLGCHVG GESVMVVEAA VRGLSMGLEK MVKAADCVRL KTLKGILDIL
201: TPPQCVEFLA AAATFQVQLR RWGNRRHYVT HS

Arabidopsis Description

DOGL4Protein DOG1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84JC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.