CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020997.1-P	Field mustard	nucleus	94.98	79.09
CDY34053	Canola	cytosol	89.54	65.64
CDY66844	Canola	cytosol	76.99	64.56
CDY70293	Canola	cytosol	64.44	62.1
AT4G18690.1	Thale cress	cytosol	70.71	59.93
AT4G18680.1	Thale cress	cytosol	56.9	57.87
CDX78883	Canola	cytosol, nucleus, plastid	23.43	44.8
CDY58051	Canola	nucleus	51.88	44.29
CDX99444	Canola	cytosol, nucleus, plastid	23.85	43.51
CDY52216	Canola	cytosol	50.21	42.86
CDY61468	Canola	cytosol	50.21	42.86
CDY23102	Canola	nucleus	49.37	42.14
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	27.2	32.66
VIT_19s0014g01220.t01	Wine grape	nucleus	33.05	32.11
Solyc02g072570.1.1	Tomato	cytosol	33.47	32.0
PGSC0003DMT400088909	Potato	nucleus	32.64	31.97
PGSC0003DMT400073296	Potato	nucleus	33.47	31.87
PGSC0003DMT400073292	Potato	cytosol	32.64	31.2
PGSC0003DMT400068759	Potato	cytosol	29.71	30.34
PGSC0003DMT400073133	Potato	nucleus	32.64	27.86
Solyc02g073570.1.1	Tomato	nucleus	32.22	27.6
Zm00001d043390_P001	Maize	cytosol	32.22	25.93
OQU87585	Sorghum	cytosol	33.05	25.65
GSMUA_Achr4P08070_001	Banana	cytosol	24.27	25.55
TraesCS3A01G306200.1	Wheat	cytosol	30.13	24.32
TraesCS3D01G295800.1	Wheat	cytosol	29.71	24.32
TraesCS3B01G330400.1	Wheat	cytosol	29.29	23.73
CDX93460	Canola	cytosol, plastid	22.59	23.48
CDX94928	Canola	plastid	21.76	22.61
CDY22613	Canola	cytosol, plastid	21.34	21.98
CDX97614	Canola	nucleus	20.92	21.1
CDY70896	Canola	nucleus	20.5	20.68
CDX98510	Canola	nucleus	20.5	20.68
CDX78882	Canola	cytosol	20.08	20.08
CDX99446	Canola	cytosol	20.08	20.08

Protein Annotations

MapMan:15.5.4.5	GO:A0A078CIC5	EnsemblPlants:CDX76507	ProteinID:CDX76507	ProteinID:CDX76507.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00126930001	InterPro:IPR025422
PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF210	InterPro:TGA_domain	UniParc:UPI0004EDBD78
SEG:seg	:	:	:	:	:

Description

BnaA08g08930D

Coordinates

chrLK031807:-:1677422..1678952

Molecular Weight (calculated)

27125.9 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.514

Length

239 amino acids

Sequence
(BLAST)

001: MASSSSSSYG IEQLQKECYY EWMSLQAKHI VDLKEALMRQ RSNAYNHHKL EELVGKIVND FQSYAKRRSE LTDKSCSSYF APSWNSSLEN GLLWMGGCRP
101: SSFIDENIHD GHDGDSSMSD LTATQLEKIN DLHVKVIREE DKLTKKYANF QEDVADMPIA VTAFWRDSVE ADVAVEDALD KHEECMGVLM AEADKVRVET
201: LRRIVEVLTP VQAAEFLLSG KRLHMSALEG SKDDMYNSQ

Best Arabidopsis Sequence Match ( AT4G18690.1 )
(BLAST)

001: MATSSSSYGI EQLQKGCYYE WMSVQAKHIV DLKEALMSHR SKEDHKLEEL VGKIVNDFQK YTEKRSELSR RSCSSYFAPS WNSPLENGLL WMGGCRPSSF
101: IRVIYSLCGS QAETQLSQYL LKIDENVEVN HGGSMSDLNA SQLAKINDLH IKVIEKEDKI TKKSANLQEN VADMPIAIAA YATDLMNGDV VVEDALDKYE
201: EGMAVLMVEA DKLRFETLRK IVDVVTPVQA AEFLLAGKRL HISLHEWGRV REEQRFGCVR TDAAAATGGA GTEKSKRSSL LM

Arabidopsis Description

DOGL3Protein DOG1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q58FV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.