Factsheet for GSMUA_Achr4P08070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043390_P001	Maize	cytosol	43.17	33.0
TraesCS3D01G295800.1	Wheat	cytosol	42.29	32.88
TraesCS3A01G306200.1	Wheat	cytosol	42.73	32.77
TraesCS3B01G330400.1	Wheat	cytosol	41.41	31.86
OQU87585	Sorghum	cytosol	41.85	30.84
VIT_19s0014g01220.t01	Wine grape	nucleus	33.04	30.49
CDX78883	Canola	cytosol, nucleus, plastid	16.74	30.4
Solyc02g072570.1.1	Tomato	cytosol	31.28	28.4
CDX99444	Canola	cytosol, nucleus, plastid	16.3	28.24
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	24.23	27.64
PGSC0003DMT400088909	Potato	nucleus	29.52	27.46
PGSC0003DMT400073292	Potato	cytosol	29.96	27.2
Solyc02g073570.1.1	Tomato	nucleus	33.04	26.88
Bra013338.1-P	Field mustard	cytosol	29.52	26.59
PGSC0003DMT400068759	Potato	cytosol	27.31	26.5
PGSC0003DMT400073133	Potato	nucleus	32.6	26.43
PGSC0003DMT400073296	Potato	nucleus	29.07	26.29
AT4G18690.1	Thale cress	cytosol	32.16	25.89
GSMUA_Achr1P11520_001	Banana	cytosol	25.11	25.22
AT4G18680.1	Thale cress	cytosol	25.99	25.11
Bra020997.1-P	Field mustard	nucleus	31.28	24.74
CDY61468	Canola	cytosol	29.96	24.29
CDY58051	Canola	nucleus	29.96	24.29
CDX76507	Canola	nucleus	25.55	24.27
CDY52216	Canola	cytosol	29.52	23.93
CDY23102	Canola	nucleus	29.52	23.93
Bra025050.1-P	Field mustard	nucleus	29.52	23.93
Bra017589.1-P	Field mustard	cytosol	29.52	23.93
CDY70293	Canola	cytosol	25.11	22.98
Bra012582.1-P	Field mustard	cytosol	25.11	22.98
GSMUA_Achr5P28280_001	Banana	cytosol	27.31	22.96
CDY66844	Canola	cytosol	28.63	22.81
CDY34053	Canola	cytosol	31.28	21.78
AT5G45830.1	Thale cress	nucleus	28.63	20.12

Protein Annotations

MapMan:15.5.4.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr4G08070_001	EnsemblPlants:GSMUA_Achr4P08070_001	EnsemblPlants:GSMUA_Achr4T08070_001	InterPro:IPR025422	UniProt:M0SM24	PFAM:PF14144
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF176	InterPro:TGA_domain	UniParc:UPI000296C2F5	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G08070_001]

Coordinates

chr4:-:5988789..5989472

Molecular Weight (calculated)

26442.7 Da

IEP (calculated)

9.082

GRAVY (calculated)

-0.541

Length

227 amino acids

Sequence
(BLAST)

001: MECRFLACYE EWLQIQGADL NELLQAISSQ NGSRARSEME LRELVEKSVR HYEEYYERRR RLLREDGPAF FAPPWCNSFE KAVLWVGGCR PSMFIRLIYS
101: LSSAGLEAHL DNLAGRAFAS HGEGLVELSA PQLVLVNELH RSTLLEENRI TSQVATLQEN LADRPLLPIV KERQRWRRSD TSRGEIGDRG DAEVVAAMGH
201: MRRRWRVWWR RQIGLGWRRR GRCCRTS

Best Arabidopsis Sequence Match ( AT4G18690.1 )
(BLAST)

001: MATSSSSYGI EQLQKGCYYE WMSVQAKHIV DLKEALMSHR SKEDHKLEEL VGKIVNDFQK YTEKRSELSR RSCSSYFAPS WNSPLENGLL WMGGCRPSSF
101: IRVIYSLCGS QAETQLSQYL LKIDENVEVN HGGSMSDLNA SQLAKINDLH IKVIEKEDKI TKKSANLQEN VADMPIAIAA YATDLMNGDV VVEDALDKYE
201: EGMAVLMVEA DKLRFETLRK IVDVVTPVQA AEFLLAGKRL HISLHEWGRV REEQRFGCVR TDAAAATGGA GTEKSKRSSL LM

Arabidopsis Description

DOGL3Protein DOG1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q58FV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.