Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G018820.1 | Barley | extracellular | 35.56 | 54.24 |
| TraesCS3A01G103500.1 | Wheat | cytosol | 50.74 | 52.69 |
| TraesCS3B01G120900.1 | Wheat | cytosol | 50.74 | 52.69 |
| TraesCS3D01G105800.1 | Wheat | cytosol | 50.74 | 52.69 |
| VIT_07s0031g02670.t01 | Wine grape | nucleus | 45.56 | 48.24 |
| Os01t0159000-01 | Rice | plastid | 32.22 | 48.07 |
| Zm00001d039771_P001 | Maize | plastid | 47.78 | 47.43 |
| OQU86274 | Sorghum | plastid | 47.41 | 45.88 |
| Solyc05g056410.1.1 | Tomato | cytosol | 43.7 | 43.22 |
| KRH59621 | Soybean | cytosol | 44.81 | 42.46 |
| GSMUA_Achr1P11520_001 | Banana | cytosol | 34.44 | 41.15 |
| PGSC0003DMT400059950 | Potato | cytosol | 42.22 | 40.14 |
| KRH58220 | Soybean | cytosol | 26.67 | 37.5 |
| TraesCS2A01G010800.1 | Wheat | cytosol | 27.41 | 37.37 |
| KRH04319 | Soybean | cytosol | 24.81 | 31.75 |
| GSMUA_Achr4P08070_001 | Banana | cytosol | 22.96 | 27.31 |
Protein Annotations
| MapMan:15.5.4.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr5G28280_001 | EnsemblPlants:GSMUA_Achr5P28280_001 | EnsemblPlants:GSMUA_Achr5T28280_001 | InterPro:IPR025422 | UniProt:M0T2F2 |
| PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF130 | InterPro:TGA_domain | UniParc:UPI0002949D14 |
| SEG:seg | : | : | : | : | : |
Description
transcription factor HBP-1b, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G28280_001]
Coordinates
chr5:+:28555226..28556038
Molecular Weight (calculated)
30621.3 Da
IEP (calculated)
5.048
GRAVY (calculated)
-0.468
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSANENQQR GEETAAARNE PRAPEHFAKF FECWLAEQER DLQVLRTAAA SAGEELRLRP LVDRVLGHYE YYYCAKAASV RRDVLPMFNP TWTSSTENLF
101: LWAGGWRPTM AFHLLYSKSG LQFEPRLLEL IVGNPTRDLA DLSPDQLERI DGLHRLTVRL EKEISEEEAQ VQESVADARM VELTHALAES EEVEADAMEQ
201: EMKRKRDRMN EVLQRADQLR LETLKGLVEI LKPVQAVHFL IAAAELHLKV HEFGKSKDAA AAAAATGRPE
101: LWAGGWRPTM AFHLLYSKSG LQFEPRLLEL IVGNPTRDLA DLSPDQLERI DGLHRLTVRL EKEISEEEAQ VQESVADARM VELTHALAES EEVEADAMEQ
201: EMKRKRDRMN EVLQRADQLR LETLKGLVEI LKPVQAVHFL IAAAELHLKV HEFGKSKDAA AAAAATGRPE
001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV
Arabidopsis Description
DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.