Factsheet for GSMUA_Achr1P11520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G400300.1	Wheat	mitochondrion	52.65	52.65
TraesCS1B01G420300.1	Wheat	mitochondrion	52.65	52.65
TraesCS1A01G392200.1	Wheat	mitochondrion	52.65	52.65
HORVU1Hr1G086580.1	Barley	mitochondrion	52.65	52.19
Os05t0560200-00	Rice	mitochondrion	50.44	51.12
EES19938	Sorghum	cytosol, mitochondrion	50.44	49.35
Zm00001d038990_P001	Maize	cytosol, mitochondrion	49.12	47.84
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	44.25	44.05
VIT_19s0014g01210.t01	Wine grape	cytosol	39.82	38.96
Solyc07g062380.1.1	Tomato	nucleus	36.28	36.28
PGSC0003DMT400018207	Potato	nucleus	26.99	35.26
GSMUA_Achr5P28280_001	Banana	cytosol	41.15	34.44
CDX97614	Canola	nucleus	35.4	33.76
Bra027297.1-P	Field mustard	nucleus	35.4	33.76
CDY70896	Canola	nucleus	34.96	33.33
CDX98510	Canola	nucleus	34.96	33.33
PGSC0003DMT400039657	Potato	cytosol	32.74	33.04
AT3G14880.1	Thale cress	nucleus	34.96	32.38
Solyc12g014300.1.1	Tomato	cytosol	22.57	31.48
KRH21958	Soybean	cytosol	37.17	31.34
GSMUA_Achr4P08070_001	Banana	cytosol	25.22	25.11

Protein Annotations

MapMan:15.5.4.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0043565	GO:GO:0080167	EnsemblPlantsGene:GSMUA_Achr1G11520_001	EnsemblPlants:GSMUA_Achr1P11520_001	EnsemblPlants:GSMUA_Achr1T11520_001	InterPro:IPR025422
UniProt:M0RZ11	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF268	InterPro:TGA_domain
UniParc:UPI0002954A98	SEG:seg	:	:	:	:

Description

Putative Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G11520_001]

Coordinates

chr1:-:8837207..8837887

Molecular Weight (calculated)

25136.9 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.193

Length

226 amino acids

Sequence
(BLAST)

001: MDSDEFIFVA VWPRELSRLR RDLRCARGDA DRALVDRAIA LYECFFRARS TAARSDPVRA YAAPWATALE RAAHWVAGWR PNALIHLLYS ESSLRFESQL
101: PDLLLGVHSG DLGDLSSAQL GRIDELQRRT IRGELEISAE MAAVQEGLAE PFPRSDAELE GKVGELTRVM ERADELRLRT LREVVDILEP VQAVDLLVAA
201: ADLEIGLREF GLSQDGSRVG PQGRAS

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.