Factsheet for Solyc07g062380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018207	Potato	nucleus	64.6	84.39
VIT_19s0014g01450.t01	Wine grape	cytosol, mitochondrion, peroxisome	62.39	62.11
Solyc12g014300.1.1	Tomato	cytosol	42.92	59.88
VIT_19s0014g01210.t01	Wine grape	cytosol	54.42	53.25
Bra027297.1-P	Field mustard	nucleus	50.44	48.1
CDX97614	Canola	nucleus	50.44	48.1
KRH21958	Soybean	cytosol	56.19	47.39
CDY70896	Canola	nucleus	49.12	46.84
CDX98510	Canola	nucleus	49.12	46.84
AT3G14880.1	Thale cress	nucleus	47.79	44.26
GSMUA_Achr1P11520_001	Banana	cytosol	36.28	36.28
Solyc02g076640.1.1	Tomato	cytosol	13.72	35.63
TraesCS1B01G420300.1	Wheat	mitochondrion	34.96	34.96
TraesCS1D01G400300.1	Wheat	mitochondrion	34.51	34.51
TraesCS1A01G392200.1	Wheat	mitochondrion	34.51	34.51
HORVU1Hr1G086580.1	Barley	mitochondrion	34.07	33.77
EES19938	Sorghum	cytosol, mitochondrion	34.51	33.77
Os05t0560200-00	Rice	mitochondrion	33.19	33.63
Zm00001d038990_P001	Maize	cytosol, mitochondrion	34.07	33.19
Solyc05g056410.1.1	Tomato	cytosol	35.84	29.67
Solyc02g073580.1.1	Tomato	cytosol	28.32	29.22
Solyc03g006120.2.1	Tomato	cytosol, mitochondrion	24.34	27.64
Solyc10g085210.1.1	Tomato	cytosol	27.88	25.61
Solyc04g076970.2.1	Tomato	nucleus	26.99	25.1
Solyc02g073570.1.1	Tomato	nucleus	30.97	25.09
Solyc02g072570.1.1	Tomato	cytosol	27.43	24.8
Solyc09g005610.2.1	Tomato	cytosol	25.66	24.17

Protein Annotations

MapMan:15.5.4.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR025422	UniProt:K4CGS1	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF195	EnsemblPlantsGene:Solyc07g062380.1	EnsemblPlants:Solyc07g062380.1.1	InterPro:TGA_domain	UniParc:UPI000276B670	SEG:seg

Description

No Description!

Coordinates

chr7:+:65146617..65147496

Molecular Weight (calculated)

26428.5 Da

IEP (calculated)

5.554

GRAVY (calculated)

-0.389

Length

226 amino acids

Sequence
(BLAST)

001: MSFQRFYETW FDQLKEIVRQ LNQVPRPATS DHHRELHQLL VQKVVSHIYE YYRVKSLAAK NDILSVFSAP WSTSLERSLH WIAGWRPTTA FHLIYTESSI
101: LFESHIIDIL RGLRYGDLGD LSPEQLARVS EFQCETVHEE NSITDELNDW QDGASEIIGL MGDIEEKMEK LVEILEKADK LRMKTIENLV QLLTPQQAVE
201: FLIASAHLQF GIRKWGINHD RQRENP

Best Arabidopsis Sequence Match ( AT3G14880.2 )
(BLAST)

001: MSQETAIASF KKFQQSWIEQ LRNHLNHLRS AQNHHRNSAT GDEERLREAV DRVMEHFREY HRAKWAATDK DVIEVMASPW ASALERSLQW VGGWRPTTLF
101: HLVYTESSIL FESRIVDILR GFRTGDLSDL SPSQFRTVSE LQCETVKEEN AITEELSEWQ DDASDLVMGT SSDPDQRIRR LAEIVHRTDD LRLRTITRVV
201: EVLSPLQQAE FLVAAAELRT GVAGWGTSHD RRRSSEV

Arabidopsis Description

DNA-binding protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LKB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.