Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028832 | Potato | cytosol | 39.43 | 87.39 |
| PGSC0003DMT400028833 | Potato | cytosol | 86.59 | 85.89 |
| Solyc09g005610.2.1 | Tomato | cytosol | 58.54 | 60.0 |
| KRH49400 | Soybean | cytosol | 41.87 | 44.21 |
| KRH00273 | Soybean | cytosol | 40.65 | 43.1 |
| Zm00001d040624_P001 | Maize | cytosol | 28.86 | 31.7 |
| KXG32375 | Sorghum | cytosol | 29.27 | 31.3 |
| Solyc04g076970.2.1 | Tomato | nucleus | 30.89 | 31.28 |
| Zm00001d009087_P001 | Maize | cytosol | 27.64 | 30.22 |
| Solyc02g076640.1.1 | Tomato | cytosol | 10.57 | 29.89 |
| Solyc02g073580.1.1 | Tomato | cytosol | 25.2 | 28.31 |
| Solyc07g062380.1.1 | Tomato | nucleus | 25.61 | 27.88 |
| TraesCS2B01G512700.1 | Wheat | cytosol | 26.83 | 27.5 |
| TraesCS2A01G486100.1 | Wheat | mitochondrion | 26.83 | 26.51 |
| Os01t0306400-01 | Rice | nucleus | 28.05 | 26.34 |
| Solyc03g006120.2.1 | Tomato | cytosol, mitochondrion | 20.73 | 25.63 |
| Solyc12g014300.1.1 | Tomato | cytosol | 16.67 | 25.31 |
| Solyc05g056410.1.1 | Tomato | cytosol | 28.05 | 25.27 |
| HORVU2Hr1G108600.1 | Barley | cytosol | 13.01 | 25.0 |
| Solyc02g073570.1.1 | Tomato | nucleus | 26.42 | 23.3 |
| Solyc02g072570.1.1 | Tomato | cytosol | 23.17 | 22.8 |
Protein Annotations
| MapMan:15.5.4.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR025422 | UniProt:K4D3V5 | PFAM:PF14144 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF145 | EnsemblPlantsGene:Solyc10g085210.1 | EnsemblPlants:Solyc10g085210.1.1 | InterPro:TGA_domain | UniParc:UPI000276A719 | SEG:seg |
Description
No Description!
Coordinates
chr10:-:64481124..64482687
Molecular Weight (calculated)
28598.7 Da
IEP (calculated)
4.823
GRAVY (calculated)
-0.555
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGGSCSSHD DNFFEVFLVG WFIRQEQFQN ELVVAQDTFD DQENDMRGLI HRVLAHYQQY YEEKSRMTHR NVFRVFSPTW FSPLERSFLW ITGFNPGLVF
101: NLVTNSINDL SEHQVERLNR LKQETKAQER SLTKELAQIQ ESVASPPLVD LARRLGTQLL YTDNINTDIE EVDGDIDQLK TALENVVTDA DRLRTRTAER
201: VVGLLSPLQS LKFLSAVGQL QLRARMMGME REVERQQQRN EDTNGW
101: NLVTNSINDL SEHQVERLNR LKQETKAQER SLTKELAQIQ ESVASPPLVD LARRLGTQLL YTDNINTDIE EVDGDIDQLK TALENVVTDA DRLRTRTAER
201: VVGLLSPLQS LKFLSAVGQL QLRARMMGME REVERQQQRN EDTNGW
001: MPNTSSSQSF TIFVDGWLIR HRYFVEQLMC ASSLDETNRI SLEEQQSLVA QFLSHCLQYY QEKFASVSLA GDNVFTFFCP PWFNSYAKLI LWVGDFKPSL
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA
101: VFKLTEVSVA DLTRHQKDRI SSLKSETRRK EREVMRDFAL VQQSVADPPV MLAARRVGAV GMVDGEETDL EEAMEVLKAG MAAAMNNADQ LRCSTVGKVV
201: EILTPPQAIK VLRTIGQLHL RLRDRDQERA
Arabidopsis Description
RAS1At1g09950 [Source:UniProtKB/TrEMBL;Acc:O04515]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.